Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30816
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   3.1  
SB_25795| Best HMM Match : RVT_1 (HMM E-Value=0.29)                    27   5.4  
SB_41928| Best HMM Match : Cuticle_1 (HMM E-Value=4.5)                 27   9.5  
SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07)                   27   9.5  

>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 93   KYTLCRGNRLCLHSRCFSLTTKGSSGMFIAVNSYPQRREPFS*ACARCCDTITQG 257
            +Y + +GNR+   ++   LT+K S G    V  Y   R P+  A        T+G
Sbjct: 1138 QYRVLQGNRIVPAAQVTELTSKLSKGEIGKVMEYTVERRPYPAAVQATAQPATKG 1192


>SB_25795| Best HMM Match : RVT_1 (HMM E-Value=0.29)
          Length = 384

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 131 FPVFFLDYEGQLWNVYCSKQLPSTT 205
           +P+  +D   Q+W+ YC K+LP  T
Sbjct: 112 YPIPVIDESYQIWHRYCWKRLPFGT 136


>SB_41928| Best HMM Match : Cuticle_1 (HMM E-Value=4.5)
          Length = 169

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 241 TLSHKGKDLFFYKAELDF 294
           T  H G+ LF++K +LDF
Sbjct: 66  TFDHTGQQLFYFKPKLDF 83


>SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07)
          Length = 502

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 254 LCDSVTAPRACSAEGLASLRVAVYCNKHSRAALR 153
           LC SV+    C+    A L   ++C + S A LR
Sbjct: 149 LCQSVSGDEGCAVAETAELIALMHCLESSAATLR 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,400,495
Number of Sequences: 59808
Number of extensions: 189139
Number of successful extensions: 340
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)