Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30816
         (449 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA...    29   2.9  
X07131-1|CAA30143.1|  616|Drosophila melanogaster protein ( D. m...    27   8.8  
M17211-1|AAA28417.1|  616|Drosophila melanogaster protein ( D.me...    27   8.8  

>AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA
            protein.
          Length = 1860

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 168  QSCPS*SRKNTGNVNTTCYRDITCTS 91
            + CP+  ++NT NV T C  D+T  S
Sbjct: 1280 RKCPTPPKRNTPNVTTECLNDMTMPS 1305


>X07131-1|CAA30143.1|  616|Drosophila melanogaster protein ( D.
           melanogaster adultShaker ShA mRNA for put. K(+)-channel.
           ).
          Length = 616

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 37  LYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIPG 138
           + SNFN F  + A    + S  +  VT C Y+PG
Sbjct: 477 IVSNFNYFYHREADREEMQSQNFNHVTSCSYLPG 510


>M17211-1|AAA28417.1|  616|Drosophila melanogaster protein (
           D.melanogaster potassiumchannel (Shaker) mRNA, complete
           cds. ).
          Length = 616

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 37  LYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIPG 138
           + SNFN F  + A    + S  +  VT C Y+PG
Sbjct: 477 IVSNFNYFYHREADREEMQSQNFNHVTSCSYLPG 510


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,572
Number of Sequences: 53049
Number of extensions: 272391
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)