Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30816
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical
           protein F32B4.4b protein.
          Length = 663

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 248 DSVTAPRACSAEGLASLRVAVYCNKHSRAALRSQGKTPGM*TQPVT 111
           + + AP + S+EG  + R A+     SR+  R  G  P    +P+T
Sbjct: 119 EPIHAPESSSSEGQRAKRRAIEAPVRSRSRSRGGGGEPRSSRKPIT 164


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 248 DSVTAPRACSAEGLASLRVAVYCNKHSRAALRSQGKTPGM*TQPVT 111
           + + AP + S+EG  + R A+     SR+  R  G  P    +P+T
Sbjct: 227 EPIHAPESSSSEGQRAKRRAIEAPVRSRSRSRGGGGEPRSSRKPIT 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,568,670
Number of Sequences: 27780
Number of extensions: 146176
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)