Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30812
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 31 0.23
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 29 0.71
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.94
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 29 0.94
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 28 1.2
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 2.2
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 27 2.2
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 2.2
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 3.8
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 3.8
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.8
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 5.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.6
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb... 26 6.6
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 6.6
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 8.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 8.7
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c... 25 8.7
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 30.7 bits (66), Expect = 0.23
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Frame = -1
Query: 434 LITELFQSLVNLICSCQRGFREFHVVFSLRLQ--------LIQLSEEIVELL 303
L+TE+F S +N + RG R+F + SL L+ L+ + +E+VE+L
Sbjct: 403 LVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEIL 454
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 29.1 bits (62), Expect = 0.71
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 145 NKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLE 252
N L E + + +D E+D+LI E E+ L+N+E
Sbjct: 248 NGLMESRSQSLKILDSNVNEMDKLIMERENALNNVE 283
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +3
Query: 276 LLEQGHDRQEEL----NDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTE 443
LL Q +++EL N+LL D L+ Q + + AA E K +EF Q+T+
Sbjct: 91 LLMQERKKRKELESAKNNLLNVYDSLKMQKASVSSMVNRKQRAAKEEQKIQEEFERQITD 150
Query: 444 SHKQAIQATMDVPAVQ 491
++ Q +++ ++
Sbjct: 151 LLEEQQQLKLEIERLE 166
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 261 RRGRDLLEQGHDRQEELNDLLAKLDELQAQAKN 359
+R DLL + + Q++L ++LA +D+LQ+ N
Sbjct: 140 KRIEDLLYERQNHQQQLEEVLATVDQLQSLVTN 172
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 363 VELTKATLTAANEIYKTLKEFS 428
VE TK ++AANE +KT K F+
Sbjct: 54 VEETKKAISAANEAFKTYKNFT 75
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 402 IYKTLKEFSDQVTESHKQA 458
+ KTL FSDQV E HK A
Sbjct: 122 LQKTLSAFSDQVIEFHKNA 140
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 37 MTELADQALKRARAVYDEALGLYAEVNTTLLPDIKLNKLHEDS-MEMNRTIDEKSAELDR 213
+T L + R + EA+ ++E + + L LN +D +E RT +EK LD+
Sbjct: 5 ITSLQTELSNRHANMVSEAVLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKLRALDK 64
Query: 214 LIAENEDTLHNL 249
L + L NL
Sbjct: 65 LQLDASKNLSNL 76
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 300 QEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYK 410
Q+E N+LL +L+ LQAQ KN + + +E+ K
Sbjct: 87 QKENNELLEQLEMLQAQLKNSTLDSPKEVEVNSEVVK 123
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +3
Query: 243 QFRGGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKE 422
Q+R GI + L E+ HDR+ +A+ ++ ++ + L K L ++++ + E
Sbjct: 137 QYRKGIEKMAKLYEREHDRRS-----IAEAEKKYVESAQKITLLKQALKRYHDLHIEIDE 191
Query: 423 FSDQVTES 446
TES
Sbjct: 192 EDVPSTES 199
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 303 EELNDLLAKLDELQAQAKNDVELTKATLTAANEIYK 410
E N A L KN++ LT A L + +EIYK
Sbjct: 142 ENTNVCKASLYRFMLMCKNELGLTDAALFSISEIYK 177
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 276 LLEQGHDRQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHK 452
L + + E +DL K + ++KN +EL TA + + L E S+ V HK
Sbjct: 461 LQREDFTKDVEKSDLWIKSLRQEYESKNLLELLDKHQTALSSVENRLDEISEIVDSYHK 519
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 298 GRRSSTISSLSWMSCRRKLKTTWN 369
G SST+ SLS R K K WN
Sbjct: 337 GHASSTVGSLSKEEARFKAKAKWN 360
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 617 LLRPPTKSRRKRPLPKAKTVNFERRVQTKLDYSCSKVREKTVSK 748
++RPPT++ RPL + N + +K S SKV+ +K
Sbjct: 236 VVRPPTRTSTTRPLSRVNVTNASGSI-SKNSTSPSKVKVNASTK 278
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 61 LKRARAVYDEALGLYAEVNTTLLPDIKLNKLHEDSMEMNRTIDEKSAELDRLIAENE 231
LK +YD G+YA + L N+LH E+ I+ +A +R I +N+
Sbjct: 2185 LKLQHQLYDVTFGIYAHIAQQLFLQ---NELHRCGEELYYLIESIAAVQNRGIHQNK 2238
>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 240
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 252 GGIRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVEL---TKATLTAANE 401
G IR G L+ Q DR+EE+ +++K L KN + + TK + A N+
Sbjct: 28 GSIRLGPGLVFQKKDREEEI--VVSKAGRLHQTGKNAMLIDSRTKRYIPATND 78
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 282 EQGHDRQEELNDLLAKLDELQAQAKN 359
+ H E+++D+L +DEL++ +KN
Sbjct: 1042 QANHQSSEKMSDILKGVDELRSVSKN 1067
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 8.7
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = -2
Query: 97 LKLRHTQLWLSLKLGRLVLSYCSV 26
L +H + W+ L + R+ S+C++
Sbjct: 99 LSRKHIEAWIELAIRRMFYSFCAI 122
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +1
Query: 130 PDIKLNKLHEDSMEMNRTIDEKSAELDRL 216
P+ K++ D+M++ + + +LDRL
Sbjct: 382 PEFSFTKVYSDNMKLQQKVSSLKLQLDRL 410
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 396 NEIYKTLKEFSDQVTESHKQAIQATM 473
N ++ TL SDQ SHK + A +
Sbjct: 744 NYVFNTLTSISDQCISSHKYCMDACL 769
>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 134
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 145 NKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEA*GAVGTCWNKVTTGRRSSTISS 324
N H + +R +++ + L+ L NE LEE + WNK+T ++ +SS
Sbjct: 63 NSQHPKIKKAHRHLEQLKSLLESLPTNNE-----LEETDAGFDSYWNKITA--KAKVVSS 115
Query: 325 L 327
L
Sbjct: 116 L 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,550
Number of Sequences: 5004
Number of extensions: 42129
Number of successful extensions: 203
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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