Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30812
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 35 0.060
03_02_0070 - 5409910-5410116,5410228-5410722,5411086-5411412 33 0.24
07_03_0337 + 16918613-16919078,16921610-16921725,16922039-169222... 32 0.56
02_05_0155 - 26340413-26340870,26341029-26341119 30 1.7
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 3.0
04_01_0290 + 3843610-3843712,3844088-3846003 29 3.0
04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887 29 3.9
09_06_0040 - 20432008-20432091,20432152-20432229,20432322-204329... 29 5.2
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 29 5.2
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 29 5.2
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 5.2
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 28 6.9
08_01_0996 + 10089800-10090149,10090426-10090483,10092922-100931... 28 6.9
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 28 9.1
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 28 9.1
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 28 9.1
02_05_0180 - 26519845-26520684 28 9.1
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 9.1
>03_02_0348 +
7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 35.1 bits (77), Expect = 0.060
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +3
Query: 303 EELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFS----DQVTESHKQAIQ 464
EE DLL K+DE +A+A+ ++E+ K T+ + EI K S D T+ H + ++
Sbjct: 230 EERGDLLMKIDEEKARAEAEIEVLKNTIQSELEIRNEEKNMSVRSADVATKQHMEDVK 287
>03_02_0070 - 5409910-5410116,5410228-5410722,5411086-5411412
Length = 342
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 214 LIAENEDTLHNLEEA*GAVGTCWNKVTTGRRSSTISSLSWMSCRRKLKTT 363
LIA N++T NL+E VG+ W ++ TG S + + R TT
Sbjct: 247 LIARNKETAPNLDELKSVVGSLWQQLDTGHVYSCYNKMMIQEDRSMQSTT 296
>07_03_0337 +
16918613-16919078,16921610-16921725,16922039-16922208,
16922509-16922602,16923371-16923457,16923529-16923609,
16923800-16923925,16924541-16924649,16924723-16924802,
16925401-16925529,16925605-16925705,16926075-16926208,
16926307-16926404,16926488-16926607,16927008-16927022,
16927930-16927957,16928066-16928118,16928446-16928517,
16928605-16928652,16928928-16929033,16929110-16929168,
16929792-16929887,16929942-16929959
Length = 801
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 139 KLNKLHEDSMEM-NRTIDEKSAELDRLIAENEDTLHNLEEA*GAVG 273
KL + H+ ++ +R ++EK E+ +L+ EN+D LHN EA A G
Sbjct: 595 KLKEEHDSFRDIADRMLEEKDREVAKLLRENKD-LHNSLEAKAAFG 639
>02_05_0155 - 26340413-26340870,26341029-26341119
Length = 182
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 443 VAQASDPSHDGRAGCPREGSGGEESINSITEELVAASDKAKEGQGTWR 586
VA++ P+ G R GG ++ + I +V A+D +G+ WR
Sbjct: 12 VAESGPPATGGGVLAARRRGGGNDASSQIWLAVVVAADGGSDGRRLWR 59
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 446 AQASDPSHDGRAGCPREGSGGEESINSITEELVAASDKAKEGQG 577
A A+D D RA PRE GEE S EE+ + ++ +EG+G
Sbjct: 3 APAADDD-DHRAALPREEDDGEEEEGS-EEEVESDDEEEEEGEG 44
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +1
Query: 1 NELNAASGKLNSMTELADQALKRARAVYDEALGLYAEVNTTLLPDIKLNKLHEDSMEMNR 180
NEL+A LN A +AL + EA L ++ L + K K E++ ++
Sbjct: 575 NELDAKHSLLNDEKNSAQKALDVEKV---EAYKLKSKFEE--LENYKAEK-DEEAGKLKA 628
Query: 181 TIDEKSAELDRLIAENE 231
++EK +E+D LI +NE
Sbjct: 629 ALEEKKSEIDVLIKDNE 645
>04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887
Length = 253
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 461 PSHDGRAGCPREGSGGEESINSITEELVAASDKAKEGQG 577
PS +G+ +G+GGE+ + E+ A D+ K+G+G
Sbjct: 82 PSEEGKKS---DGNGGEKPTSPADEKSAARKDEGKDGKG 117
>09_06_0040 -
20432008-20432091,20432152-20432229,20432322-20432941,
20433042-20433108,20433276-20433291,20433781-20433887,
20433989-20434037,20435059-20435142,20435288-20435384,
20435914-20435985,20436075-20436435,20437864-20438259
Length = 676
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 360 DVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAVQEKV 500
D+E +A A+E + L+ D++TES ++ +QA + Q +
Sbjct: 108 DIERQEAAARLASEEVRRLERRRDEITESQRELLQAREMIDEAQRSL 154
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 437 DRVAQASDPSHDGRAGCPREGSGGEESINSITEELVAASDKAKEGQGTWR 586
DRV + + D + G GGEE + +E+V A+EG+ R
Sbjct: 146 DRVYRTAMRGRDMQVVAAAHGGGGEEEAGVVDDEVVRVLRDAEEGKAVER 195
>02_04_0226 +
21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 321 LAKLDELQAQAKNDVEL 371
LAKLDEL+ AKND EL
Sbjct: 123 LAKLDELRQAAKNDAEL 139
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.7 bits (61), Expect = 5.2
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = +1
Query: 4 ELNAASGKLNSMTELADQALKRARAV--YDEALGLYAEVNTTLLPDIKLN-KLHEDSMEM 174
+L K S+ E + A+++ + + + ++L E T++ +K+ K H +S+E
Sbjct: 1775 KLGQEEQKCTSLREKLNVAVRKGKGLVQHRDSLKQTMEEMNTMIEKLKVERKQHIESLE- 1833
Query: 175 NRTIDEKSAELDRLIAENEDTLHNLEEA*GAVGTCWNKVTTGRRSST 315
E+S+ + RL AENE +LH+ + + + V GR T
Sbjct: 1834 ----SERSSLMGRL-AENEKSLHDATQYLSRLLNSLSTVDIGREFDT 1875
>11_06_0061 - 19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +1
Query: 43 ELADQA--LKRARAVYDEALGLYAEVNTTLLPDIKLNKLHEDSMEMNRTIDEKSAELDRL 216
++AD+A + R A+ DE A++ +L KL +M++ +++ AEL RL
Sbjct: 975 QIADKAFAVSRVDALLDENDSAIAKLEQ------ELGKLRWKGQKMSKKKEDEDAELSRL 1028
Query: 217 IAENEDTLHNLEEA*G 264
AEN +N EEA G
Sbjct: 1029 KAEN----NNAEEAHG 1040
>08_01_0996 +
10089800-10090149,10090426-10090483,10092922-10093126,
10093201-10093280,10093377-10093477,10093566-10093691,
10094099-10094101,10094736-10094763,10094875-10094961,
10095187-10095273,10095346-10095411,10095511-10095603,
10095688-10095744,10095834-10095959,10096049-10096139,
10096233-10096321,10096951-10097141,10097224-10097322,
10098814-10098829
Length = 650
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 404 LQDFERVQ*SSDRVAQASDPSHDGRAGCPRE-GSGGEESINSITEELVAASDKAKEGQGT 580
+++ +R Q V AS S DG PR+ G GG ++ ++ KE Q
Sbjct: 39 MEEAKRRQRRPSSVGGASRGSGDGDRRAPRDAGGGGAAAVTEKEGDIGGDRATVKEAQQR 98
Query: 581 WR 586
WR
Sbjct: 99 WR 100
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 258 IRRGRDLLEQGHDRQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYK 410
IRR DLL + D +++ D + ELQA A +E A L A N+I +
Sbjct: 1642 IRRNDDLLSRNDDLIKKIEDSGQVVAELQA-ALERIEGKAANLEAENQILR 1691
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 294 DRQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQA 458
D+QEE++ A+++EL +N E + L AN LK+ +++ K A
Sbjct: 486 DKQEEIDRARAQVEELNVSLQNTKESYEVMLDEANYEKVCLKKSVERMEAETKSA 540
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 437 DRVAQASDPSHDGRAGCPREGSGGEESINSITEELV 544
+ ++ + PS G AG PRE GG S SI ++ +
Sbjct: 648 EEISLLASPSEGGGAGEPREPDGGTLSAASIRKKAI 683
>02_05_0180 - 26519845-26520684
Length = 279
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 446 AQASDPSHDGRAGCPREGSGGEESINS---ITEELVAASDKAK--EGQGTWRTGRKRNMP 610
AQ G G G G + NS + LV +D A +G G +GR ++P
Sbjct: 54 AQKISTGGSGGGGGGGGGDDGARAWNSRYLSDDPLVVVADNAASDDGGGGGASGRPLSLP 113
Query: 611 IKLLRPP 631
++ L+PP
Sbjct: 114 VRRLKPP 120
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +1
Query: 34 SMTELADQALKRARAVYDEALGLYAEVNTTLLPDIKLNKLHEDSMEMNRTIDEKSAELDR 213
++ E +Q ++ ++ E GL A + + K H ++ E N + ++ + D
Sbjct: 975 AVEEALEQEREKISSLTSEIEGLKALLVAEQEENDLTKKAHANAQERNEELSKEVEDADG 1034
Query: 214 LIAENEDTLHNLEE 255
I + DT+ LEE
Sbjct: 1035 KIKQLSDTVQRLEE 1048
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,052,234
Number of Sequences: 37544
Number of extensions: 302943
Number of successful extensions: 1315
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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