Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30811
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    46   5e-06
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    28   1.00 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   1.3  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   4.0  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   4.0  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   5.3  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   5.3  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   7.0  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   9.3  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   9.3  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   9.3  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.3  
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    25   9.3  

>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 26/67 (38%), Positives = 37/67 (55%)
 Frame = +1

Query: 268 PITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESVQENHLLEDEELR 447
           P+T + I  P+ +T C H YE++ IL+L+       CPV GC     +Q + L EDE L 
Sbjct: 180 PLTLQPIVHPILSTACNHFYEKDAILSLL--NPTCVCPVVGC--EARLQRSLLKEDEILE 235

Query: 448 FRLSLSQ 468
            RL  +Q
Sbjct: 236 RRLRRAQ 242


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +2

Query: 62  SNINTLQERFEDGLKTLSQNRINPNSHRYMQELKTRYESGLQSVSS---SGLTENLNESD 232
           SN+ TLQ R+   L  L   +    + R  +  KT Y  G  +      S + +N     
Sbjct: 338 SNLITLQSRYSQALSELETTKRAFAALRKEKSKKTNYSVGAYNEDRNVLSNMLDNERREK 397

Query: 233 IAIVQTNGSF*IQLPKNI 286
            A++Q   S  +QL K +
Sbjct: 398 EALLQELESLRVQLSKKV 415


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 141 WLLGLILFCERVFRPSSNL 85
           WL GL  FC RVFR  S+L
Sbjct: 733 WLQGLASFCGRVFRRYSSL 751


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 110 LSQNRINPNSHRYMQELKTRYESGLQSVSSSGLTENLNESDI 235
           +S+N+ N +S +  Q+      S LQS+S++ L EN+ +  I
Sbjct: 406 ISRNQSNLSSFQQQQQF-----SALQSISNNALNENIEQPPI 442


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 53  TNISNINTLQERFEDGLKT 109
           T +SN+N ++E  +DGLKT
Sbjct: 175 TILSNMNAVEETVKDGLKT 193


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 144 LWLLGLILFCERVFRPSSNLSWSVFMFDMLV 52
           +W LG+ LFC    R   N S    +FD +V
Sbjct: 336 VWALGVTLFCLLFGRCPFNASMEYELFDKIV 366


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 268 PITKKHISDPVKNTMCGHV--YERETILNLIRRKHRIRCPVAGCAN 399
           P++   IS PV++  C H+  ++    L + ++     CPV  CA+
Sbjct: 306 PLSFSRISLPVRSVFCKHIQCFDASAFLEMNKQTPSWMCPV--CAS 349


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 271 LDLETAICLDNSYIRFI 221
           LD ET IC+ +SYI ++
Sbjct: 444 LDEETGICIPSSYISYV 460


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 337 TILNLIRRKHRI-RCPVAGCANPESVQE 417
           T  N I+R+ R+ + P++ C NP+S  E
Sbjct: 151 TTPNSIKRQKRLFKSPISNCLNPKSDPE 178


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 74  TLQERFEDGLKTLSQNRINPNSHRYMQE 157
           T Q+RFE+  KT +QN  +  ++ +++E
Sbjct: 179 TQQQRFEEAAKTEAQNLSSLRNYVHLEE 206


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 50 DTNISNINTLQERFE 94
          D N++N NTLQ+R+E
Sbjct: 37 DFNLNNKNTLQDRYE 51


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 307 TMCGHVYERETILNLIRRKHRIRCPV 384
           T CGH Y    I++ ++  + + CP+
Sbjct: 211 TDCGHTYCYACIMSRLKLVNNVSCPI 236


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 73  YTPRKIRGWPENSFTEQ 123
           YTP+K +G+PE S  E+
Sbjct: 60  YTPKKYKGFPEISSREE 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,358
Number of Sequences: 5004
Number of extensions: 43644
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)