Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30811
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0324 - 20273797-20274261 31 0.58
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 30 1.0
03_05_1082 - 30239385-30239561,30239937-30240009,30240382-302404... 28 4.1
07_01_0420 + 3212498-3213076 27 7.1
07_01_0223 - 1642553-1643676,1643725-1644541 27 7.1
09_04_0187 - 15403048-15403237,15403808-15403959,15404052-154042... 27 9.4
05_03_0265 - 11293020-11293329,11293911-11294232,11294332-11294455 27 9.4
03_02_0369 + 7843364-7843631,7844994-7845053,7845659-7845741,784... 27 9.4
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952... 27 9.4
>05_04_0324 - 20273797-20274261
Length = 154
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 319 HVYERETILNLIRRKH--RIRCPVAGCANPESVQENHL--LEDEELRFRLSLSQHSTMIH 486
H Y+RE +N + + R+R PV GC SV ++ L L+ + R R LS++ H
Sbjct: 88 HPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQDLSRARFELSKYQVTNH 147
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 268 PITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVA----GCANPESVQENHLLED 435
P+ ++ + D + C H + R+ I I + CPV GCA E ++ +H ++D
Sbjct: 75 PLCRRILRDATTVSECLHTFCRKCIYKKINDEELEHCPVCKIDLGCAPLEKLRADHNIQD 134
>03_05_1082 -
30239385-30239561,30239937-30240009,30240382-30240432,
30240521-30240978,30241099-30241435,30241836-30241935,
30243880-30244003
Length = 439
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 268 PITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVA----GCANPESVQENHLLED 435
P+ K + + T C H + +E I+ I + CPV GC E ++ +H ++D
Sbjct: 23 PLCKGLLREATAITECLHTFCKECIMEKIDDEEVDHCPVCNIDLGCDPEEKLRPDHNVQD 82
>07_01_0420 + 3212498-3213076
Length = 192
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 313 CGHVYERETILNLIRRKHRIRCPVAGCANPES 408
CGH++ R+ I +RR R CPV C P S
Sbjct: 151 CGHLFHRDCIFTWLRR--RPTCPV--CRAPPS 178
>07_01_0223 - 1642553-1643676,1643725-1644541
Length = 646
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 113 SQNRINPNSHRYMQELKTRYESGLQSVSSSGLTENLN 223
++N +PN+H + EL T LQ +S++ + N+N
Sbjct: 122 NKNNGDPNNHIFAIELDTVQNDDLQDISNNHIGININ 158
>09_04_0187 -
15403048-15403237,15403808-15403959,15404052-15404210,
15404422-15404562
Length = 213
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 177 LSYLVFNSCMYLWLLGLILFCERVFRPSSNLSWSVF 70
L + +SC LWL+ + C+ P S +W+ F
Sbjct: 31 LCLVASSSCWSLWLISQVPMCKSYADPLSLSAWTCF 66
>05_03_0265 - 11293020-11293329,11293911-11294232,11294332-11294455
Length = 251
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 411 NAFWIGTSRNWTSDSMLPSYEIQNSLSFI 325
N W+ SRNW ++ +Y SLSFI
Sbjct: 191 NTGWMAMSRNWGANWQSNAYLAGQSLSFI 219
>03_02_0369 +
7843364-7843631,7844994-7845053,7845659-7845741,
7845834-7845898,7845965-7845998,7846102-7846172,
7850409-7850532,7851151-7851268,7851803-7851889,
7851972-7852055,7852127-7852209,7852556-7852624
Length = 381
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 56 NISNINTLQERFEDGLKTLSQNRINPNSHRYMQELKTRYESG 181
N+ L ER ++ + +NRIN + + KTR + G
Sbjct: 119 NVKEAQWLGERIKERILQTEKNRINKDGELVISSTKTRTQKG 160
>01_06_0919 - 32993752-32993856,32994383-32994592,32994666-32995220,
32995705-32995926,32996381-32996511,32997456-32998353,
32998453-32998530,32998612-32998683,32998728-32998763,
32999413-33000353,33000531-33000659,33000751-33000894,
33000994-33001060,33002434-33002502,33003144-33003278
Length = 1263
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 307 TMCGHVYERETILNLIRRKHRIRCPVAGC 393
T+CGHV+ + IL + + CPV+ C
Sbjct: 983 TICGHVFCNQCILEQLTGDDSV-CPVSNC 1010
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,290,571
Number of Sequences: 37544
Number of extensions: 241417
Number of successful extensions: 591
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -