Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30811
(531 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20371| Best HMM Match : U-box (HMM E-Value=0.075) 48 5e-06
SB_10061| Best HMM Match : Gemini_C4 (HMM E-Value=2.1) 31 0.77
SB_16652| Best HMM Match : I-set (HMM E-Value=1.2e-37) 31 0.77
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 30 1.4
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 29 2.4
SB_45136| Best HMM Match : EGF_CA (HMM E-Value=8.7e-36) 28 4.1
SB_20482| Best HMM Match : p450 (HMM E-Value=4.6e-28) 28 4.1
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0) 28 4.1
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 28 5.4
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08) 28 5.4
SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_20371| Best HMM Match : U-box (HMM E-Value=0.075)
Length = 515
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +1
Query: 268 PITKKHISDPVKNTMCGHVYERETILNLIR--RKHRIRCPVAGCANPESVQENHLLEDEE 441
PIT K ++ P+ + C H YE+E I ++I+ R +RCP++GC P ++ N L + E
Sbjct: 446 PITLKEMTKPMSSKNCKHSYEKEAIEHMIKKSRVKSVRCPISGC--PHTLTLNDLEVNVE 503
Query: 442 LRFRLSLSQHST 477
L ++ + T
Sbjct: 504 LEHHIARKKRQT 515
>SB_10061| Best HMM Match : Gemini_C4 (HMM E-Value=2.1)
Length = 212
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 50 DTNISNINTLQERFEDGLKTLSQNRINPNSH-RYMQELKTRYESGLQSVSSSGLTENLNE 226
+ ISNI+ L + +S+ R+N N H + EL+ + ++S + N++
Sbjct: 7 NVRISNISELLVNVNVRISNISELRVNVNVHISNISELRVNVNVHISNISEIRVNVNVHI 66
Query: 227 SDIAIVQTNGSF 262
S+I+ ++ N +F
Sbjct: 67 SNISELRVNVNF 78
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 50 DTNISNINTLQERFEDGLKTLSQNRINPNSH-RYMQELKTRYESGLQSVSSSGLTENLNE 226
+ +ISNI+ L+ + +S+ R+N N H + EL+ + ++S + N+
Sbjct: 35 NVHISNISELRVNVNVHISNISEIRVNVNVHISNISELRVNVNFRISNISELRVNVNVRI 94
Query: 227 SDIAIVQTN 253
S+I+ ++ N
Sbjct: 95 SNISELRVN 103
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 50 DTNISNINTLQERFEDGLKTLSQNRINPNSH-RYMQELKTRYESGLQSVSSSGLTENLNE 226
+ ISNI+ L+ + +S+ R+N N H + EL+ + ++S + N++
Sbjct: 91 NVRISNISELRVNMNVHISNISELRVNVNVHISIISELRVNVNVRISNISELRVNVNVHI 150
Query: 227 SDIAIVQTN 253
S I+ ++ N
Sbjct: 151 SIISKLRVN 159
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 50 DTNISNINTLQERFEDGLKTLSQNRINPNSH-RYMQELKTRYESGLQSVSSSGLTENLNE 226
+ ISNI+ L+ + +S+ R+N N H + E++ + ++S + N
Sbjct: 21 NVRISNISELRVNVNVHISNISELRVNVNVHISNISEIRVNVNVHISNISELRVNVNFRI 80
Query: 227 SDIAIVQTN 253
S+I+ ++ N
Sbjct: 81 SNISELRVN 89
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 59 ISNINTLQERFEDGLKTLSQNRINPNSH-RYMQELKTRYESGLQSVSSSGLTENLNESDI 235
ISNI+ L+ + +S+ R+N N H + EL+ + +S + N+ S+I
Sbjct: 80 ISNISELRVNVNVRISNISELRVNMNVHISNISELRVNVNVHISIISELRVNVNVRISNI 139
Query: 236 AIVQTN 253
+ ++ N
Sbjct: 140 SELRVN 145
>SB_16652| Best HMM Match : I-set (HMM E-Value=1.2e-37)
Length = 552
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -1
Query: 204 PDEDTLCNPLSYLVFNSCMYLWLLGLILFCERVFRPSSNLSWS 76
PDE+ + L+ L+ + + + G+IL+C +P +N++WS
Sbjct: 266 PDENAVGLVLNKLLCLNTVSTRIKGIILYCNTSGKPQANITWS 308
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 256 QFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKH-RIRCPVAGCA 396
Q L P + +P + CGHVY R + NLI K + C C+
Sbjct: 1948 QELCPACFCEVDNPYQLATCGHVYCRGCVTNLIEAKQFPLTCAYEDCS 1995
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 268 PITKKHISDPVKNTMCGHV--YERETILNLIRRKHRIRCPVAGCANPESV 411
PIT + IS P + C H+ ++ E+ L L + +CPV E V
Sbjct: 932 PITFRRISLPARGHDCKHIQCFDLESYLRLNCERGSWKCPVCNSCEVEEV 981
>SB_45136| Best HMM Match : EGF_CA (HMM E-Value=8.7e-36)
Length = 123
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 329 SYTWPHIVFFTGSDICFLVIGSRNCH 252
S+T I +TG DI +GS NCH
Sbjct: 28 SFTCTCIAVYTGDDINECEVGSHNCH 53
>SB_20482| Best HMM Match : p450 (HMM E-Value=4.6e-28)
Length = 473
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 381 WTSDSMLPSYEIQNSLSFIHM 319
WT D +PSY++ + LS++ M
Sbjct: 390 WTDDDQVPSYDMVHQLSYLDM 410
>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1705
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 329 SYTWPHIVFFTGSDICFLVIGSRNCH 252
S+T I +TG DI +GS NCH
Sbjct: 28 SFTCTCIAVYTGDDINECEVGSHNCH 53
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 62 SNINTLQERFEDGLKTLSQNRINPNSHRYMQELKTRYESGLQSVSSSGLTENLNESD 232
+ ++ L+ + L + N R ++ELK R G S LTE + E D
Sbjct: 135 AQLDKLENSDTESLVEERMKELKANYEREVEELKERLAKGESDARDSELTERIQEID 191
>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
Length = 1167
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 194 SSSGLTENLNESDIAIVQTNGSF 262
SSS +T NLN + + IVQ NG +
Sbjct: 985 SSSTMTRNLNHTTLPIVQYNGCY 1007
>SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = +1
Query: 235 SYCPNKWQFLDPITKKHISDPVKNTMCGHVYERET 339
++C N + D +KH + ++C H +E ++
Sbjct: 6 AFCTNDFYLRDIFVEKHWKSVINRSICDHFFEAQS 40
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 129 ILTAIDTCKN*RLDMKV-DYKVYLHQDLQ 212
+L IDT + R ++V DYKV L+QDL+
Sbjct: 499 VLHGIDTMQGNRAALRVGDYKVILNQDLK 527
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,700,881
Number of Sequences: 59808
Number of extensions: 293782
Number of successful extensions: 646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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