BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30811 (531 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC032797-1|AAH32797.1| 247|Homo sapiens non-SMC element 2, MMS2... 60 5e-09 AK057002-1|BAB71338.1| 247|Homo sapiens protein ( Homo sapiens ... 60 5e-09 Z93024-4|CAI18792.1| 2253|Homo sapiens polycystic kidney disease... 33 0.83 EF517278-1|ABR22603.1| 2255|Homo sapiens PKDREJ protein. 33 0.83 AL078611-3|CAI18766.1| 2253|Homo sapiens polycystic kidney disea... 33 0.83 AL031034-1|CAI18795.1| 2253|Homo sapiens polycystic kidney disea... 33 0.83 AF116458-1|AAD18021.1| 2253|Homo sapiens polycystic kidney disea... 33 0.83 BC029520-1|AAH29520.1| 384|Homo sapiens WDSUB1 protein protein. 31 2.5 AK093494-1|BAC04184.1| 476|Homo sapiens protein ( Homo sapiens ... 31 2.5 AC009307-1|AAX93043.1| 219|Homo sapiens unknown protein. 31 2.5 CR457150-1|CAG33431.1| 245|Homo sapiens RNF138 protein. 29 7.7 BT006878-1|AAP35524.1| 245|Homo sapiens STRIN protein protein. 29 7.7 BC018107-1|AAH18107.1| 245|Homo sapiens ring finger protein 138... 29 7.7 AF162680-1|AAD46623.2| 245|Homo sapiens HSD-4 protein protein. 29 7.7 >BC032797-1|AAH32797.1| 247|Homo sapiens non-SMC element 2, MMS21 homolog (S. cerevisiae) protein. Length = 247 Score = 60.1 bits (139), Expect = 5e-09 Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 4/67 (5%) Frame = +1 Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLI----RRKHRIRCPVAGCANPESVQENHL 426 F PITK+ + PVKN +CGH YE + I+ +I +RK + CP GC++ + ++++ L Sbjct: 167 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTD-IRKSDL 225 Query: 427 LEDEELR 447 ++DE LR Sbjct: 226 IQDEALR 232 >AK057002-1|BAB71338.1| 247|Homo sapiens protein ( Homo sapiens cDNA FLJ32440 fis, clone SKMUS2001492. ). Length = 247 Score = 60.1 bits (139), Expect = 5e-09 Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 4/67 (5%) Frame = +1 Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLI----RRKHRIRCPVAGCANPESVQENHL 426 F PITK+ + PVKN +CGH YE + I+ +I +RK + CP GC++ + ++++ L Sbjct: 167 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTD-IRKSDL 225 Query: 427 LEDEELR 447 ++DE LR Sbjct: 226 IQDEALR 232 >Z93024-4|CAI18792.1| 2253|Homo sapiens polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg protein. Length = 2253 Score = 32.7 bits (71), Expect = 0.83 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -1 Query: 399 IGTSRNWTSDSMLPSYEIQNSLSFIHMATHCILHWI*YMF 280 +G + +WT LP EI+NS FIH+ + L W Y+F Sbjct: 267 VGQAPDWTQPLDLPQLEIRNSPLFIHIPNNS-LQWGVYVF 305 >EF517278-1|ABR22603.1| 2255|Homo sapiens PKDREJ protein. Length = 2255 Score = 32.7 bits (71), Expect = 0.83 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -1 Query: 399 IGTSRNWTSDSMLPSYEIQNSLSFIHMATHCILHWI*YMF 280 +G + +WT LP EI+NS FIH+ + L W Y+F Sbjct: 267 VGQAPDWTQPLDLPQLEIRNSPLFIHIPNNS-LQWGVYVF 305 >AL078611-3|CAI18766.1| 2253|Homo sapiens polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg protein. Length = 2253 Score = 32.7 bits (71), Expect = 0.83 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -1 Query: 399 IGTSRNWTSDSMLPSYEIQNSLSFIHMATHCILHWI*YMF 280 +G + +WT LP EI+NS FIH+ + L W Y+F Sbjct: 267 VGQAPDWTQPLDLPQLEIRNSPLFIHIPNNS-LQWGVYVF 305 >AL031034-1|CAI18795.1| 2253|Homo sapiens polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg protein. Length = 2253 Score = 32.7 bits (71), Expect = 0.83 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -1 Query: 399 IGTSRNWTSDSMLPSYEIQNSLSFIHMATHCILHWI*YMF 280 +G + +WT LP EI+NS FIH+ + L W Y+F Sbjct: 267 VGQAPDWTQPLDLPQLEIRNSPLFIHIPNNS-LQWGVYVF 305 >AF116458-1|AAD18021.1| 2253|Homo sapiens polycystic kidney disease and receptor for egg jelly related protein protein. Length = 2253 Score = 32.7 bits (71), Expect = 0.83 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -1 Query: 399 IGTSRNWTSDSMLPSYEIQNSLSFIHMATHCILHWI*YMF 280 +G + +WT LP EI+NS FIH+ + L W Y+F Sbjct: 267 VGQAPDWTQPLDLPQLEIRNSPLFIHIPNNS-LQWGVYVF 305 >BC029520-1|AAH29520.1| 384|Homo sapiens WDSUB1 protein protein. Length = 384 Score = 31.1 bits (67), Expect = 2.5 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 256 QFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESV 411 +F+ PIT++ + DPV G+ YE+E + N I +K R P+ P +V Sbjct: 315 EFICPITRELMKDPV-IASDGYSYEKEAMENWISKKKR-TSPMTNLVLPSAV 364 >AK093494-1|BAC04184.1| 476|Homo sapiens protein ( Homo sapiens cDNA FLJ36175 fis, clone TESTI2026453, weakly similar to PUTATIVE SERINE/THREONINE-PROTEIN KINASE PKWA (EC 2.7.1.-). ). Length = 476 Score = 31.1 bits (67), Expect = 2.5 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 256 QFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESV 411 +F+ PIT++ + DPV G+ YE+E + N I +K R P+ P +V Sbjct: 407 EFICPITRELMKDPV-IASDGYSYEKEAMENWISKKKR-TSPMTNLVLPSAV 456 >AC009307-1|AAX93043.1| 219|Homo sapiens unknown protein. Length = 219 Score = 31.1 bits (67), Expect = 2.5 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 256 QFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESV 411 +F+ PIT++ + DPV G+ YE+E + N I +K R P+ P +V Sbjct: 150 EFICPITRELMKDPV-IASDGYSYEKEAMENWISKKKR-TSPMTNLVLPSAV 199 >CR457150-1|CAG33431.1| 245|Homo sapiens RNF138 protein. Length = 245 Score = 29.5 bits (63), Expect = 7.7 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPV 384 F P+ ++ + PV+ T C HV+ R+ L + R+ CP+ Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM-RESGAHCPL 56 >BT006878-1|AAP35524.1| 245|Homo sapiens STRIN protein protein. Length = 245 Score = 29.5 bits (63), Expect = 7.7 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPV 384 F P+ ++ + PV+ T C HV+ R+ L + R+ CP+ Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM-RESGAHCPL 56 >BC018107-1|AAH18107.1| 245|Homo sapiens ring finger protein 138 protein. Length = 245 Score = 29.5 bits (63), Expect = 7.7 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPV 384 F P+ ++ + PV+ T C HV+ R+ L + R+ CP+ Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM-RESGAHCPL 56 >AF162680-1|AAD46623.2| 245|Homo sapiens HSD-4 protein protein. Length = 245 Score = 29.5 bits (63), Expect = 7.7 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPV 384 F P+ ++ + PV+ T C HV+ R+ L + R+ CP+ Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM-RESGAHCPL 56 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 69,136,064 Number of Sequences: 237096 Number of extensions: 1447058 Number of successful extensions: 10451 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 10337 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10449 length of database: 76,859,062 effective HSP length: 85 effective length of database: 56,705,902 effective search space used: 5160237082 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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