Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30811
(531 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032797-1|AAH32797.1| 247|Homo sapiens non-SMC element 2, MMS2... 60 5e-09
AK057002-1|BAB71338.1| 247|Homo sapiens protein ( Homo sapiens ... 60 5e-09
Z93024-4|CAI18792.1| 2253|Homo sapiens polycystic kidney disease... 33 0.83
EF517278-1|ABR22603.1| 2255|Homo sapiens PKDREJ protein. 33 0.83
AL078611-3|CAI18766.1| 2253|Homo sapiens polycystic kidney disea... 33 0.83
AL031034-1|CAI18795.1| 2253|Homo sapiens polycystic kidney disea... 33 0.83
AF116458-1|AAD18021.1| 2253|Homo sapiens polycystic kidney disea... 33 0.83
BC029520-1|AAH29520.1| 384|Homo sapiens WDSUB1 protein protein. 31 2.5
AK093494-1|BAC04184.1| 476|Homo sapiens protein ( Homo sapiens ... 31 2.5
AC009307-1|AAX93043.1| 219|Homo sapiens unknown protein. 31 2.5
CR457150-1|CAG33431.1| 245|Homo sapiens RNF138 protein. 29 7.7
BT006878-1|AAP35524.1| 245|Homo sapiens STRIN protein protein. 29 7.7
BC018107-1|AAH18107.1| 245|Homo sapiens ring finger protein 138... 29 7.7
AF162680-1|AAD46623.2| 245|Homo sapiens HSD-4 protein protein. 29 7.7
>BC032797-1|AAH32797.1| 247|Homo sapiens non-SMC element 2, MMS21
homolog (S. cerevisiae) protein.
Length = 247
Score = 60.1 bits (139), Expect = 5e-09
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Frame = +1
Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLI----RRKHRIRCPVAGCANPESVQENHL 426
F PITK+ + PVKN +CGH YE + I+ +I +RK + CP GC++ + ++++ L
Sbjct: 167 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTD-IRKSDL 225
Query: 427 LEDEELR 447
++DE LR
Sbjct: 226 IQDEALR 232
>AK057002-1|BAB71338.1| 247|Homo sapiens protein ( Homo sapiens
cDNA FLJ32440 fis, clone SKMUS2001492. ).
Length = 247
Score = 60.1 bits (139), Expect = 5e-09
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Frame = +1
Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLI----RRKHRIRCPVAGCANPESVQENHL 426
F PITK+ + PVKN +CGH YE + I+ +I +RK + CP GC++ + ++++ L
Sbjct: 167 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTD-IRKSDL 225
Query: 427 LEDEELR 447
++DE LR
Sbjct: 226 IQDEALR 232
>Z93024-4|CAI18792.1| 2253|Homo sapiens polycystic kidney disease
(polycystin) and REJ homolog (sperm receptor for egg
protein.
Length = 2253
Score = 32.7 bits (71), Expect = 0.83
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 399 IGTSRNWTSDSMLPSYEIQNSLSFIHMATHCILHWI*YMF 280
+G + +WT LP EI+NS FIH+ + L W Y+F
Sbjct: 267 VGQAPDWTQPLDLPQLEIRNSPLFIHIPNNS-LQWGVYVF 305
>EF517278-1|ABR22603.1| 2255|Homo sapiens PKDREJ protein.
Length = 2255
Score = 32.7 bits (71), Expect = 0.83
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 399 IGTSRNWTSDSMLPSYEIQNSLSFIHMATHCILHWI*YMF 280
+G + +WT LP EI+NS FIH+ + L W Y+F
Sbjct: 267 VGQAPDWTQPLDLPQLEIRNSPLFIHIPNNS-LQWGVYVF 305
>AL078611-3|CAI18766.1| 2253|Homo sapiens polycystic kidney disease
(polycystin) and REJ homolog (sperm receptor for egg
protein.
Length = 2253
Score = 32.7 bits (71), Expect = 0.83
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 399 IGTSRNWTSDSMLPSYEIQNSLSFIHMATHCILHWI*YMF 280
+G + +WT LP EI+NS FIH+ + L W Y+F
Sbjct: 267 VGQAPDWTQPLDLPQLEIRNSPLFIHIPNNS-LQWGVYVF 305
>AL031034-1|CAI18795.1| 2253|Homo sapiens polycystic kidney disease
(polycystin) and REJ homolog (sperm receptor for egg
protein.
Length = 2253
Score = 32.7 bits (71), Expect = 0.83
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 399 IGTSRNWTSDSMLPSYEIQNSLSFIHMATHCILHWI*YMF 280
+G + +WT LP EI+NS FIH+ + L W Y+F
Sbjct: 267 VGQAPDWTQPLDLPQLEIRNSPLFIHIPNNS-LQWGVYVF 305
>AF116458-1|AAD18021.1| 2253|Homo sapiens polycystic kidney disease
and receptor for egg jelly related protein protein.
Length = 2253
Score = 32.7 bits (71), Expect = 0.83
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 399 IGTSRNWTSDSMLPSYEIQNSLSFIHMATHCILHWI*YMF 280
+G + +WT LP EI+NS FIH+ + L W Y+F
Sbjct: 267 VGQAPDWTQPLDLPQLEIRNSPLFIHIPNNS-LQWGVYVF 305
>BC029520-1|AAH29520.1| 384|Homo sapiens WDSUB1 protein protein.
Length = 384
Score = 31.1 bits (67), Expect = 2.5
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 256 QFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESV 411
+F+ PIT++ + DPV G+ YE+E + N I +K R P+ P +V
Sbjct: 315 EFICPITRELMKDPV-IASDGYSYEKEAMENWISKKKR-TSPMTNLVLPSAV 364
>AK093494-1|BAC04184.1| 476|Homo sapiens protein ( Homo sapiens
cDNA FLJ36175 fis, clone TESTI2026453, weakly similar to
PUTATIVE SERINE/THREONINE-PROTEIN KINASE PKWA (EC
2.7.1.-). ).
Length = 476
Score = 31.1 bits (67), Expect = 2.5
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 256 QFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESV 411
+F+ PIT++ + DPV G+ YE+E + N I +K R P+ P +V
Sbjct: 407 EFICPITRELMKDPV-IASDGYSYEKEAMENWISKKKR-TSPMTNLVLPSAV 456
>AC009307-1|AAX93043.1| 219|Homo sapiens unknown protein.
Length = 219
Score = 31.1 bits (67), Expect = 2.5
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 256 QFLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESV 411
+F+ PIT++ + DPV G+ YE+E + N I +K R P+ P +V
Sbjct: 150 EFICPITRELMKDPV-IASDGYSYEKEAMENWISKKKR-TSPMTNLVLPSAV 199
>CR457150-1|CAG33431.1| 245|Homo sapiens RNF138 protein.
Length = 245
Score = 29.5 bits (63), Expect = 7.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPV 384
F P+ ++ + PV+ T C HV+ R+ L + R+ CP+
Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM-RESGAHCPL 56
>BT006878-1|AAP35524.1| 245|Homo sapiens STRIN protein protein.
Length = 245
Score = 29.5 bits (63), Expect = 7.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPV 384
F P+ ++ + PV+ T C HV+ R+ L + R+ CP+
Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM-RESGAHCPL 56
>BC018107-1|AAH18107.1| 245|Homo sapiens ring finger protein 138
protein.
Length = 245
Score = 29.5 bits (63), Expect = 7.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPV 384
F P+ ++ + PV+ T C HV+ R+ L + R+ CP+
Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM-RESGAHCPL 56
>AF162680-1|AAD46623.2| 245|Homo sapiens HSD-4 protein protein.
Length = 245
Score = 29.5 bits (63), Expect = 7.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 259 FLDPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPV 384
F P+ ++ + PV+ T C HV+ R+ L + R+ CP+
Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAM-RESGAHCPL 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,136,064
Number of Sequences: 237096
Number of extensions: 1447058
Number of successful extensions: 10451
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10449
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -