Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30811
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29244-11|AAC71092.1|  201|Caenorhabditis elegans Hypothetical p...    49   2e-06
Z82262-6|CAB05149.1|  374|Caenorhabditis elegans Hypothetical pr...    31   0.52 
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical pr...    28   4.8  
X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.        28   4.8  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    27   6.3  
AF098501-7|AAC67402.1|  199|Caenorhabditis elegans Hypothetical ...    27   6.3  
U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defecti...    27   8.4  

>U29244-11|AAC71092.1|  201|Caenorhabditis elegans Hypothetical
           protein ZK1248.11 protein.
          Length = 201

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 20/44 (45%), Positives = 30/44 (68%)
 Frame = +1

Query: 265 DPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCA 396
           DPI+KK I +PV +  CGHVY+R++I     +K  I+C + GC+
Sbjct: 136 DPISKKDIVNPVISKNCGHVYDRDSIHEFAGKKRVIKCAMQGCS 179


>Z82262-6|CAB05149.1|  374|Caenorhabditis elegans Hypothetical
           protein C43F9.6 protein.
          Length = 374

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 13/60 (21%), Positives = 31/60 (51%)
 Frame = +1

Query: 265 DPITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESVQENHLLEDEEL 444
           DP  ++ + D  KN M  ++YE  T +N + R  ++    +G    + V++  + +++ +
Sbjct: 155 DPNPRQFLEDGTKNAMSWNIYEFSTYVNYLIRYKQVLKKYSGGIGKQKVKKEEMCKNQTM 214


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 292 DPVKNTMCGHVYERETILNLIRRKHRIRCPV 384
           DP+ +T C H++ R  I     RK +++CP+
Sbjct: 30  DPILST-CFHIFCRSCINACFERKRKVQCPI 59


>Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical
           protein W09C2.1b protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 128 NPNSHRYMQELKTR-YESGLQSVSSSGLTENLNESDIAIVQTNGS 259
           NP+      +L T  Y++   + ++SG+T N N+ ++ IVQ NG+
Sbjct: 90  NPSYFYPTTQLNTYGYDTLAAATTASGITVNNNQLNVNIVQGNGT 134


>Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical
           protein W09C2.1a protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 128 NPNSHRYMQELKTR-YESGLQSVSSSGLTENLNESDIAIVQTNGS 259
           NP+      +L T  Y++   + ++SG+T N N+ ++ IVQ NG+
Sbjct: 162 NPSYFYPTTQLNTYGYDTLAAATTASGITVNNNQLNVNIVQGNGT 206


>X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 128 NPNSHRYMQELKTR-YESGLQSVSSSGLTENLNESDIAIVQTNGS 259
           NP+      +L T  Y++   + ++SG+T N N+ ++ IVQ NG+
Sbjct: 90  NPSYFYPTTQLNTYGYDTLAAATTASGITVNNNQLNVNIVQGNGT 134


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 529 FFLSIHIIILLNELNVSWSSVATMII*ISILHLPIDGFLERFL 401
           FF++    +L+N     W  + + ++  S + LPI   +ERF+
Sbjct: 86  FFVTSKCQLLINTTLFKWGQICSFLLLTSSMLLPIGFSIERFV 128


>AF098501-7|AAC67402.1|  199|Caenorhabditis elegans Hypothetical
           protein H28G03.3 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 150 MYLWLLGLILFCERVFRPSSNLS 82
           +Y W+  +I+F + +F  S+N+S
Sbjct: 161 IYTWIFQIIMFLQHIFHESNNMS 183


>U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defective
           protein 9, isoformc protein.
          Length = 537

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 50  DTNISNINTLQERFEDGLKTLSQNRINPNSHRYMQELKTRYESGLQSV 193
           +T +++I TL +  + G+ T S NR+  +S +   +LKTR E  L  +
Sbjct: 462 ETALNSIYTLVQ-LQTGM-TSSVNRLREDSTKNFSDLKTRMEMSLSPI 507


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,240,506
Number of Sequences: 27780
Number of extensions: 232534
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)