Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30811
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.5  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.5  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.9  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 125 INPNSHRYMQELKTRYES 178
           I PN++R+   L  R+ES
Sbjct: 157 IPPNAYRFRPSLNPRFES 174


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 125 INPNSHRYMQELKTRYES 178
           I PN++R+   L  R+ES
Sbjct: 157 IPPNAYRFRPSLNPRFES 174


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 125 INPNSHRYMQELKTRYES 178
           I PN++R+   L  R+ES
Sbjct: 157 IPPNAYRFRPSLNPRFES 174


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 125 INPNSHRYMQELKTRYES 178
           I PN++R+   L  R+ES
Sbjct: 390 IPPNAYRFRPSLNPRFES 407


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 326 YTWPHIVFFTGSD 288
           Y W HI F  GSD
Sbjct: 41  YEWKHIDFDFGSD 53


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 421 GFLERFLDWHIP 386
           G ++RF++WH P
Sbjct: 255 GRVKRFINWHEP 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,714
Number of Sequences: 438
Number of extensions: 2709
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)