Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30811
(531 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15150.1 68416.m01916 expressed protein 48 5e-06
At1g26300.1 68414.m03206 BSD domain-containing protein contains ... 32 0.21
At5g52450.1 68418.m06508 MATE efflux protein-related strong simi... 30 0.85
At1g09540.1 68414.m01070 myb family transcription factor (MYB61)... 30 0.85
At1g63550.1 68414.m07184 hypothetical protein low similarity to ... 29 1.5
At3g17030.1 68416.m02174 expressed protein 29 2.0
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 29 2.0
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 28 4.5
At5g20270.1 68418.m02413 expressed protein contains Pfam domain,... 28 4.5
At1g62850.1 68414.m07096 expressed protein similar to Immature c... 28 4.5
At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kina... 28 4.5
At3g46050.1 68416.m04983 kelch repeat-containing F-box family pr... 27 6.0
At1g61065.1 68414.m06875 expressed protein 27 6.0
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa... 27 7.9
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa... 27 7.9
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa... 27 7.9
>At3g15150.1 68416.m01916 expressed protein
Length = 249
Score = 47.6 bits (108), Expect = 5e-06
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +1
Query: 268 PITKKHISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESVQENHLLEDEELR 447
P+T+ ++DPV++ C HVYE+ IL+ I CPVAGC +Q + ++ D L+
Sbjct: 165 PVTE--LADPVRSMDCRHVYEKSVILHYIVNNPNANCPVAGCRG--KLQNSKVICDAMLK 220
Query: 448 FRL 456
F +
Sbjct: 221 FEI 223
>At1g26300.1 68414.m03206 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 316
Score = 32.3 bits (70), Expect = 0.21
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 107 TLSQNRINPNSHRYMQELKTRYESG---LQSVSSSGLTENLNESDIAIVQTN 253
TL ++P +YM+ELKT+ E G + ++G TE + E ++AI +T+
Sbjct: 205 TLVSTHVSPYERKYMEELKTKGEHGNEEAKKAPATGETETV-EKNVAIRRTS 255
>At5g52450.1 68418.m06508 MATE efflux protein-related strong
similarity to unknown protein (pir||T02324); contains
Pfam profile PF01554 Uncharacterized membrane protein
family
Length = 486
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 159 NSCMYLWLLGLILFCERVFRPSSNLSWSVFMFDML 55
NS Y WL ++LFC F PS +L+W+ F + L
Sbjct: 212 NSISY-WLNVVLLFCYVKFSPSCSLTWTGFSKEAL 245
>At1g09540.1 68414.m01070 myb family transcription factor (MYB61)
contains PFAM profile: myb DNA-binding domain PF00249
Length = 366
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +2
Query: 104 KTLSQNRINPNSHRYMQELKTRYESGLQSVSSSGLTENLNESDIAIVQTNGSF*IQLPKN 283
K L Q I+PN+H+ + E+++ + + S++ + N ++S + TN F ++ P +
Sbjct: 114 KKLKQRGIDPNTHKPISEVESFSDKDKPTTSNNKRSGNDHKSPSSSSATNQDFFLERPSD 173
Query: 284 I 286
+
Sbjct: 174 L 174
>At1g63550.1 68414.m07184 hypothetical protein low similarity to
receptor-like protein kinase 5 [Arabidopsis thaliana]
GI:13506747; contains Pfam profile: PF01657 Domain of
unknown function DUF26
Length = 299
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 107 TLSQNRINPNSHRYMQELKTRYESGLQSVSSSGLTENLNESDIAIVQTNGSF 262
T+ R PN R+ Q L ++ + +VSSS L E + Q+ GS+
Sbjct: 118 TIYSLRSAPNPTRFNQTLTEKFSELIFNVSSSSLVPYFVEDQERVTQSEGSY 169
>At3g17030.1 68416.m02174 expressed protein
Length = 648
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +1
Query: 262 LDPITKKH-ISDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESVQENHL---L 429
LD I + H I+ + +++CGH + E+ + H C V+ +N E V+ H+ L
Sbjct: 511 LDEIDQCHNINTRLAHSLCGHFIDEESSSSYGANLHCSFCRVSCNSNTEVVRTFHITITL 570
Query: 430 EDEELR 447
DEE +
Sbjct: 571 ADEETK 576
>At2g48050.1 68415.m06014 expressed protein ; expression supported
by MPSS
Length = 1500
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 445 SILHLPIDGFLERFLDWH 392
S+LH + GF ERFL WH
Sbjct: 157 SLLHPGVFGFFERFLAWH 174
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +2
Query: 77 LQERFEDGLKTLSQNRINPNSHRYMQELKTRYESGLQSV 193
L+E+++ GL+T NR+N S + + +E+ +++
Sbjct: 547 LKEKYKGGLRTTDSNRVNSMSESARAQERLDFEAAAEAI 585
>At5g20270.1 68418.m02413 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 332
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 320 WPHIVFFTGSDICFLVIGSRNCHLF 246
WP VF GS C L S CHLF
Sbjct: 137 WPFFVFLGGSMFCLL--ASSICHLF 159
>At1g62850.1 68414.m07096 expressed protein similar to Immature
colon carcinoma transcript 1 (Digestion substraction 1)
(DS- 1) (Swiss-Prot:Q14197) [Homo sapiens]
Length = 109
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 56 NISNINTLQERFEDGLKTLSQNRINPNSHRYMQELKTRYESG 181
N+ N L +R + + +NRIN + + KTR + G
Sbjct: 4 NVKNAYWLSDRIREKILLTEKNRINKDGELVISSTKTRTQKG 45
>At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1456
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 170 YESGLQSVSSSGLTENLNESDIAIVQTNG 256
YE GL++VS +G+T N++ ++ +NG
Sbjct: 909 YEQGLKTVSEAGMTRYENDNKVSDSGSNG 937
>At3g46050.1 68416.m04983 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 370
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 232 YSYCPNKWQFLDPITKKHISDPVKNTMC 315
Y CP +W + PITK+ + P+ + C
Sbjct: 82 YPDCPPRWFIVSPITKQKLK-PIPSVTC 108
>At1g61065.1 68414.m06875 expressed protein
Length = 180
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 174 SYLVF-NSCMYLWLLGLILFCERVFRPSSNLSWSVFMF 64
S+LV S + + + L C R PS + SW++F+F
Sbjct: 57 SFLVLLASQLLIMVASRCLCCGRALTPSGSRSWAIFLF 94
>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +1
Query: 289 SDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESVQE---NHLLE--DEELRFR 453
SDP T C H Y + IL +R +CP+ C S+++ LLE ++E FR
Sbjct: 43 SDPSTLTSCKHEYHLQCILEWCQRSS--QCPM--CWQSISLKDPTSQELLEAVEQERNFR 98
Query: 454 LSLSQHSTM 480
+ ++++T+
Sbjct: 99 FNPTRNATI 107
>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +1
Query: 289 SDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESVQE---NHLLE--DEELRFR 453
SDP T C H Y + IL +R +CP+ C S+++ LLE ++E FR
Sbjct: 43 SDPSTLTSCKHEYHLQCILEWCQRSS--QCPM--CWQSISLKDPTSQELLEAVEQERNFR 98
Query: 454 LSLSQHSTM 480
+ ++++T+
Sbjct: 99 FNPTRNATI 107
>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +1
Query: 289 SDPVKNTMCGHVYERETILNLIRRKHRIRCPVAGCANPESVQE---NHLLE--DEELRFR 453
SDP T C H Y + IL +R +CP+ C S+++ LLE ++E FR
Sbjct: 43 SDPSTLTSCKHEYHLQCILEWCQRSS--QCPM--CWQSISLKDPTSQELLEAVEQERNFR 98
Query: 454 LSLSQHSTM 480
+ ++++T+
Sbjct: 99 FNPTRNATI 107
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,519,603
Number of Sequences: 28952
Number of extensions: 216883
Number of successful extensions: 550
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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