Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30810
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.95 
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   1.7  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    27   2.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.8  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   6.7  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    25   8.9  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = +1

Query: 514 DSSFIKGPNSSHSLLAPINSYSNHKNEEEDTPLYVLVKKPEEASLIINIPNFQAPTSSPS 693
           D S        +SL  P N     K       L    +KP +A L IN  NF    S P 
Sbjct: 652 DGSETNKNEQGNSLSTPDNEPRLRKESLSSDVLLDGSEKPAQAELTINSENFPVDCSLPV 711

Query: 694 KTG 702
           +TG
Sbjct: 712 QTG 714


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 634 EEASLIINIPNFQAPTSSPSKTGKV*LSSKLSKP 735
           +  +L  N+P + A  SSP +T     SS+LSKP
Sbjct: 480 DNGTLSSNVPLYPAYNSSPVQTRTSLFSSRLSKP 513


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 520 SFIKGPNSSHSLLAPINSYSNHKNEEEDTPLY 615
           + IK    SHS  + I  +SN KN  +DT  Y
Sbjct: 47  ALIKRKQLSHSTSSDITRHSNAKNSGKDTQFY 78


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 444 PPPEPVEQRLPRIPAVAPPQKHTRFIF 524
           P PE   QR  RI  +AP ++  R +F
Sbjct: 87  PKPETKWQRFARIKGIAPKKREGRLVF 113


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/87 (22%), Positives = 37/87 (42%)
 Frame = +1

Query: 490 WLHPRNIQDSSFIKGPNSSHSLLAPINSYSNHKNEEEDTPLYVLVKKPEEASLIINIPNF 669
           +L    +Q + ++   ++S    API S   HKNE   T      + P+  + + +   +
Sbjct: 546 FLESSTVQTNKYLPKSSASPPANAPIVSSDVHKNENAGTAR----RAPQSGAFVASKAKY 601

Query: 670 QAPTSSPSKTGKV*LSSKLSKPQKESR 750
            +P   P +  +V    K S  Q  +R
Sbjct: 602 SSPYDLPEEIVQV-AQQKRSVSQNYNR 627


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 568 NSYSNHKNEEEDTPLYVLVKKPEEASLI 651
           NS+SN  N EED  + V   KP+E SL+
Sbjct: 206 NSFSNSLNSEED--VCVSPMKPKEVSLM 231


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 653 LISPTSRHPLQALPKPGRFNFHPNYPNPKRNL 748
           LI P  R   +++P P  F    + PNP+ NL
Sbjct: 43  LIPPAQRSSEESMPAPKLFPKLTSKPNPQLNL 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,281
Number of Sequences: 5004
Number of extensions: 50758
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)