Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30810
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809...    28   7.0  
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117...    28   7.0  
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    28   9.3  

>11_02_0082 -
           8088169-8088284,8088613-8088697,8090344-8090442,
           8090537-8090609,8090694-8090804,8090901-8091074,
           8091184-8091574,8091662-8092283,8092379-8093251,
           8093294-8093800
          Length = 1016

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 444 PPPEPVEQRLPRIPAVAPPQ 503
           PP +P+   LP+ PA  PPQ
Sbjct: 555 PPHDPLAPSLPQAPAATPPQ 574


>01_06_0789 -
           32010131-32010330,32010438-32010866,32011658-32011752,
           32011836-32011933,32012586-32012942,32013615-32013792,
           32013856-32013936,32014441-32014548,32014916-32015178
          Length = 602

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 411 PLVQKHIYVHVPPPEPVEQRLPRIPAVAPPQ 503
           P+++ H  VHVP P P       +P V P Q
Sbjct: 45  PVMRSHHVVHVPLPRPAVAVAVPVPQVRPAQ 75


>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +3

Query: 60  GSVSFRPSTKCALSWYSPVWL---WPM--AALNLQWDTATPLP 173
           G +     T   L+W+ P+WL   W M  AA N+    AT +P
Sbjct: 410 GGIRCAKETMPLLNWHGPIWLGTDWDMFHAAANVSRTAATRVP 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,622,303
Number of Sequences: 37544
Number of extensions: 365095
Number of successful extensions: 1562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)