Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30810
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)                   29   4.1  
SB_32736| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    29   5.4  
SB_3708| Best HMM Match : DUF374 (HMM E-Value=2.2)                     28   7.2  
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
          Length = 553

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 487 LWLHPRNIQDSSFIKGPNSSHS-LLAPINSYSNHKNEEEDTP 609
           +W+ PR I  +S+++G NS H+ +   +  Y +++N+    P
Sbjct: 485 VWVEPRRIH-NSYLRGNNSRHNEVYERVTHYHDYRNQYSHRP 525


>SB_32736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 487 LWLHPRNIQDSSFIKGPNSSHS-LLAPINSYSNHKNEEEDTP 609
           +W+ PR I  +S+++G NS H+ +   +  Y +++N+    P
Sbjct: 3   VWVEPRRIH-NSYLRGNNSRHNEVYERVTHYHDYRNQYSHRP 43


>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 361 EVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLVSL 486
           +V  +   D++V  L  LL  NTSMF+   QN +SK  ++ L
Sbjct: 268 KVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVIKL 306


>SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 325 HHRDRV-HQKSVRRQGKCCLQKGHLGSRMTTNSNSSVSAAD 206
           H   R+ H+K+ RR G  C  +GH  SR+T   N      D
Sbjct: 178 HSTSRLTHRKNQRRGGCTCHVQGHSTSRLTHRKNQRRGVGD 218


>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
 Frame = +1

Query: 451 QNQLSKDFLVSLLWLHPR--NIQDSSFIKGPNSSHSLLAPINSYSNHKNEEEDT--PLYV 618
           ++ L++D L  LL    R  N  +    +GP+   +LLA I++ S+ K ++E +   L V
Sbjct: 500 KSDLAQDLLCVLLKALRRGLNFAEEHSARGPSREEALLAAISTPSSSKEDKEASSHELKV 559

Query: 619 LVKKP-EEASLIINIPNFQAPTS 684
           L+ +  +E  +   + NF+  TS
Sbjct: 560 LLSRVIDEVVIPAVMVNFEVVTS 582


>SB_3708| Best HMM Match : DUF374 (HMM E-Value=2.2)
          Length = 498

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 426 HIYVHVPPPEPVEQRLPRIPAVAPPQKHTRFIF 524
           H +VH      V +R+P+ P    P K  RF++
Sbjct: 48  HTHVHYDVTTMVTERVPKGPTALRPSKRQRFLY 80


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 221 RTVAIGGHSGSQVAFLEAAFPLAADTLLMDSVSVVDSPLGRQRFE 355
           R   + G   ++VA   A +  A   LL D +  VDS +GR  FE
Sbjct: 606 RGTMLSGGQRTRVALARAVYADADIYLLDDPLGTVDSKVGRHLFE 650


>SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 463 SKDFLVSLL-WLHPRNIQDSSFIKGPNSSHSLLAPINSYSNHKNEEEDTPLYVLVKKPEE 639
           S DF  ++L W     +   + +    S H+L  PIN ++ + NE E     V++ KP+ 
Sbjct: 97  SSDFTENVLRWDTQAYVPCENALGSYQSYHNLTQPINYFTRYGNEAE-----VMLVKPQM 151

Query: 640 ASLIINIPNFQAPTSS 687
            +  I+     AP  S
Sbjct: 152 VTAGIDCDKLIAPVMS 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,632,240
Number of Sequences: 59808
Number of extensions: 384503
Number of successful extensions: 1281
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)