Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30810
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ...    29   4.7  
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical
           protein F23H11.4b protein.
          Length = 598

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 568 NSYSNHKNEEEDTPLYVLVKKPEEASLIINIPNFQAPTSSP 690
           N Y NH +   + PLY+ +      S I   P+  APT+SP
Sbjct: 136 NCYENHNSSVVENPLYLSLDTYRSISGITPSPS-NAPTTSP 175


>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
           protein F23H11.4a protein.
          Length = 1003

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 568 NSYSNHKNEEEDTPLYVLVKKPEEASLIINIPNFQAPTSSP 690
           N Y NH +   + PLY+ +      S I   P+  APT+SP
Sbjct: 136 NCYENHNSSVVENPLYLSLDTYRSISGITPSPS-NAPTTSP 175


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 102 WYSPVWLWPMAALNLQWDTATPLP 173
           W   +W++PMA + L W   T LP
Sbjct: 98  WNQLLWIYPMALVQLIWVPDTELP 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,706
Number of Sequences: 27780
Number of extensions: 278566
Number of successful extensions: 1035
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)