Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30810
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51600.1 68418.m06397 microtubule associated protein (MAP65/A...    30   1.9  
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ...    29   3.4  
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    29   4.4  

>At5g51600.1 68418.m06397 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to SP|P50275
           Anaphase spindle elongation protein {Saccharomyces
           cerevisiae}, protein regulating cytokinesis 1 (PRC1)
           [Homo sapiens] GI:2865521; contains Pfam profile
           PF03999: Microtubule associated protein (MAP65/ASE1
           family)
          Length = 707

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 538 NSSHSLLAPINSYSNHKNEEEDTPLYVLVKKPEEASLIINIPNFQAPTSSPSKT 699
           N   S   PI + +  +N EE+  + ++++ P+  + +I IP+  A  S P  T
Sbjct: 615 NEISSFATPIKNNNILRNLEEEKMMTMMMQTPKNVAAMIPIPSTPATVSVPMHT 668


>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 602

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 444 PPPEPVEQRLPRIPAVAPPQKHTR 515
           PPP P   + P  P  APPQK  R
Sbjct: 32  PPPPPPHHQAPLPPLEAPPQKKKR 55


>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 411 PLVQKHIYVHVPPPEPVEQRLPRIPAVAP 497
           P++Q   Y+H PPP+P  Q  P  P++ P
Sbjct: 337 PMLQ--YYMHPPPPQPPHQDRPFYPSMDP 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,575,468
Number of Sequences: 28952
Number of extensions: 278525
Number of successful extensions: 1347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)