Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30808
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    29   1.7  
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    27   6.9  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 348 YHGSSSQL*HNAAGH*ISVVCLCSSGCAS 262
           YH +S QL     GH  +V CLCSS  +S
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSS 924


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 239 FSSAGKRQEAQPLLHKHT 292
           F+ A K++E+QPLL  HT
Sbjct: 554 FTQAAKKRESQPLLEPHT 571


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 239 FSSAGKRQEAQPLLHKHT 292
           F+ A K++E+QPLL  HT
Sbjct: 537 FTQAAKKRESQPLLEPHT 554


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 282 CSSGCASCRFPAELKPSTGATNGVNRPP 199
           C   C +C     ++P+T A N + RPP
Sbjct: 68  CQLACNTCTRKNVIRPATKAPNRMRRPP 95


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 282 CSSGCASCRFPAELKPSTGATNGVNRPP 199
           C   C +C     ++P+T A N + RPP
Sbjct: 68  CQLACNTCTRKNVIRPATKAPNRMRRPP 95


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 239 FSSAGKRQEAQPLLHKHT 292
           F+ A K++E+QPLL  HT
Sbjct: 537 FTQAAKKRESQPLLEPHT 554


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,223,690
Number of Sequences: 27780
Number of extensions: 194930
Number of successful extensions: 410
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)