Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30807
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    78   2e-15
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    30   0.42 
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    28   1.3  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   3.9  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.9  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    26   6.9  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   6.9  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   9.1  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    25   9.1  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.1  

>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   RLQKIGLNCPDMICLKKHILLMSFIG-KDNKPAPKLRDIILRSDKWHSVYNEVVESMHKM 177
           R+   G+ CP+ I LK+H+LLMSF+G K     PKL+DI +   +   +Y  V  +M  +
Sbjct: 220 RVAAAGIPCPEPILLKQHVLLMSFLGDKKGWAYPKLKDIDMTPGEATKLYQLVARNMRIL 279

Query: 178 YNVGHLIHADLSEYNILWWDNKCWFM 255
           ++V HL+HADLSEYN+L+   K +F+
Sbjct: 280 FHVCHLVHADLSEYNLLYHKGKVYFI 305



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 28/47 (59%)
 Frame = +3

Query: 255 DVSQSVQPDHPNGLEFLLRDCRNIVNFFEKKGVSHVQTAEELFKSIT 395
           DVSQSV+ DHP  ++FL  D  NI  FF +     + +  +LFK IT
Sbjct: 306 DVSQSVEHDHPQSIDFLRMDILNISTFFRRLNAGCL-SLPQLFKFIT 351


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 142 VYNEVVESMHKMYNVGHLIHADLSEYNIL 228
           + N +V+ +  +YNV H+IH DL   N++
Sbjct: 165 IINSMVKGLIYLYNVLHIIHRDLKPSNVV 193


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 246 LVYDVSQSVQPDHPNGLEFLLRDCRNIVNFFEK 344
           +V D  Q V   HP+   +  RD + IV +FEK
Sbjct: 235 VVIDFPQMVSTSHPDAQFYFDRDVQCIVQYFEK 267


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 112 IILRSDKWHSVYNEVVESMHKMYNVGHLIHADLSEYNILW 231
           I+L  D W S +   V S    YN   +++++  + +I+W
Sbjct: 444 ILLSPDDWASSWYSTVRSQLDSYNCQFVVNSNQPKDSIMW 483


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 190 HLIHADLSEYNILWWDNKCWFMMFLSLCNLTT 285
           HL+H DL   NI  +  + W +  L + NL++
Sbjct: 730 HLVHLDLHANNIKIFPEEVWQVSSLKVVNLSS 761


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 364  KLQKNFLNQ*PALMKLM*TYWKEFIPHTILWHADLKSPPMIIETLAI 504
            KL  N L     L++L+  Y+K  I   +L H ++ S   ++ET ++
Sbjct: 1455 KLSVNGLEGLSRLLRLLTNYFKVEIGRKLLQHLNVLSDSKVLETASL 1501


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = -3

Query: 454 RELYVV*TPSNKFTSTSLKPVIDLKSSSAVCTCETPFFSKKLTILRQ 314
           R++++  T ++K   T L+ V+++ ++   C CE PF  + + I+ +
Sbjct: 236 RDIFIDVTATDK---TKLEIVVNMMTTMFSCYCEEPFTIEPVNIISE 279


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 752 NSQTMIPSSINISTIQRVLESCWKLISIGQSWTSLPKI 639
           N Q+ I +S N+S I+  LE   +     QS  SLPK+
Sbjct: 51  NYQSFIEASENLSNIRNNLEKVLQNSYEFQSMVSLPKV 88


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 735 SIIDKYLYNPEGFRKLLEVN 676
           S ID+Y  +PEGF K  E+N
Sbjct: 272 SDIDRYRKDPEGFMKPAELN 291


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 598 IMLPKVKLFDSGCPIFGNEVQD*PMEINFQQLSKTLWIVEIF 723
           + LP++ LFD  C  FG         + F  ++K +W + +F
Sbjct: 106 VELPQIWLFDPMCATFGLST-----SVPFPPVTKMIWQITLF 142


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 585 RKWWNHAAKSKTV**WLP 638
           +++WNH A  KTV  W P
Sbjct: 7   KRFWNHPAGPKTVHFWAP 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,680
Number of Sequences: 5004
Number of extensions: 67805
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)