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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30807
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335...    79   3e-15
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478...    33   0.19 
04_04_0339 - 24513699-24516827                                         31   0.77 
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516...    31   1.0  
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133...    31   1.0  
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362...    30   1.8  
01_05_0175 - 18936752-18937621,18938855-18941641                       30   1.8  
01_01_0510 - 3723983-3724416,3724895-3725766,3725797-3726791,372...    29   4.1  
06_03_0690 + 23545198-23545305,23545437-23547246,23547265-235473...    29   5.4  
08_02_1437 - 27096364-27097252,27098931-27099022,27099382-270996...    28   7.2  
02_05_0850 + 32209798-32210086,32210779-32212316                       28   7.2  
07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853...    28   9.5  
06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300     28   9.5  

>07_01_0444 +
           3357048-3357425,3357841-3357969,3358165-3358284,
           3358661-3358753,3358935-3359014,3359180-3359293,
           3359530-3359603,3359757-3359833,3360558-3360641,
           3360732-3360824,3360901-3361008,3361130-3361204,
           3361507-3361911
          Length = 609

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 40/117 (34%), Positives = 63/117 (53%)
 Frame = +1

Query: 1   RLQKIGLNCPDMICLKKHILLMSFIGKDNKPAPKLRDIILRSDKWHSVYNEVVESMHKMY 180
           R+   G+ CP  + L+ H+L+M FIGK    AP+L+D  L  DK    Y E++ +M  +Y
Sbjct: 305 RVGAAGIRCPKPLLLRLHVLVMEFIGKGGWAAPRLKDAALSDDKLRESYFELITTMRTLY 364

Query: 181 NVGHLIHADLSEYNILWWDNKCWFMMFLSLCNLTTLTGWSFYFEIVVILSISLKKRG 351
               L+H DLSEYNIL+++   + +      +L   +   F  E  + ++   KKRG
Sbjct: 365 QKCKLVHGDLSEYNILYFEGHLYIIDVSQSVDLDHPSALEFLKEDCLHVTDFFKKRG 421



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 26/57 (45%), Positives = 37/57 (64%)
 Frame = +3

Query: 243 MLVYDVSQSVQPDHPNGLEFLLRDCRNIVNFFEKKGVSHVQTAEELFKSITGFNEVD 413
           + + DVSQSV  DHP+ LEFL  DC ++ +FF+K+GV+ V +  ELF  +   N  D
Sbjct: 386 LYIIDVSQSVDLDHPSALEFLKEDCLHVTDFFKKRGVA-VMSVTELFNFVIDQNIAD 441


>01_06_0634 +
           30746767-30747012,30747083-30747118,30747554-30747850,
           30748482-30748544,30748643-30748696,30748837-30748854,
           30749554-30749625,30749731-30749787,30750160-30750236,
           30751013-30751094,30751585-30751701,30752083-30752210,
           30753074-30753143,30753725-30753765,30753963-30753990,
           30754151-30754210
          Length = 481

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 115 ILRSDKWHSVYNEVVESMHKMYNVGHLIHADLSEYNILWWDNK 243
           I+ +DKW  +Y  + E +  +YN G+ +    +E NI  W+ K
Sbjct: 307 IVGADKWSLLYESIPEKLQILYNDGYKLVIFTNESNIERWNKK 349


>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 427 SNKFTSTSLKPVIDLKSSSAVCTCETPFFSKKLTILRQSRSK-NSNPLGWSG-CTD 266
           +++ T + L+P++ LK  S +C  E   F     ++ Q +++  S  L W+G CTD
Sbjct: 716 NHEHTISELRPLVSLKELS-ICNMENASFDDARNVILQKKNRLVSLALSWTGSCTD 770


>07_01_0684 -
           5161218-5161427,5161509-5161616,5162217-5162390,
           5162515-5162643,5162722-5163009,5163114-5163346,
           5164235-5165060
          Length = 655

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 118 LRSDKWHSVYNEVVESMHKMY--NVGHLIHADLSEYNILWWDNK 243
           LRS KW   Y E  E  +  Y    G++I AD++ Y +  +DN+
Sbjct: 540 LRSGKWAVTYEEWPEEAYPNYANGPGYVISADIARYIVSEFDNQ 583


>03_06_0352 -
           33312443-33312652,33312747-33312854,33313224-33313397,
           33313489-33313695,33313700-33313987,33314087-33314319,
           33314450-33315263
          Length = 677

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 118 LRSDKWHSVYNEVVESMHKMY--NVGHLIHADLSEYNILWWDNK 243
           LRS KW   Y E  E ++  Y    G++I +D+++Y +  +DN+
Sbjct: 562 LRSGKWSVSYEEWQEEVYPPYANGPGYVISSDIAQYIVSEFDNQ 605


>03_05_0934 -
           28935728-28935859,28936000-28936122,28936172-28936284,
           28936363-28936430,28936517-28936600,28936937-28936980,
           28937061-28937204,28937518-28937582,28937722-28937814,
           28938132-28938262,28938375-28938394,28938904-28938987,
           28939157-28939330,28940106-28940195,28940293-28940364,
           28941318-28941365,28941458-28941570,28942786-28942849,
           28942943-28943016,28943162-28943201
          Length = 591

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -2

Query: 302 KLQPVRVVRLHRLRNIINQHLLSHQRM 222
           +LQP+ VV  H L+ I++QHL+S  R+
Sbjct: 235 ELQPIDVVVEHVLKQILSQHLVSQGRL 261


>01_05_0175 - 18936752-18937621,18938855-18941641
          Length = 1218

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 148  NEVVESMHKMYNVGHLIHADLSEYNILWWDNKC 246
            N + E++ ++ N  H++HADLSEY  +  D KC
Sbjct: 938  NMISENLGRICNA-HVVHADLSEYGAM--DEKC 967


>01_01_0510 -
           3723983-3724416,3724895-3725766,3725797-3726791,
           3727332-3727439
          Length = 802

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 238 NKCWFMMFLSLCN---LTTLTGWSFYFEIVVILSISLKKRG 351
           ++CW  +F ++ N   L  +TGWS Y EI ++   +  K G
Sbjct: 212 HRCWEDIFDAISNAQHLIYITGWSVYTEITLVRDSNRPKPG 252


>06_03_0690 +
           23545198-23545305,23545437-23547246,23547265-23547348,
           23547732-23548048,23549498-23549605,23550038-23550046
          Length = 811

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 241 KCWFMMFLSLCN---LTTLTGWSFYFEIVVI 324
           +CW  +F ++ N   L  LTGWS Y EI +I
Sbjct: 215 RCWEDVFDAISNAKHLIYLTGWSVYTEITLI 245


>08_02_1437 -
           27096364-27097252,27098931-27099022,27099382-27099654,
           27099872-27100819
          Length = 733

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 764 PLKSNSQTMIPSSINISTIQRVLESCWKLISIGQSWTSLP 645
           PL+  S   + S+ NI+ + ++  +  KL     SWTSLP
Sbjct: 362 PLRRTSG--VSSNTNITNLVKIASNSKKLTDASASWTSLP 399


>02_05_0850 + 32209798-32210086,32210779-32212316
          Length = 608

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 199 HADLSEYNILWWDNKCWFMMFL-SLCNLTTLTGWSFY 306
           H +   +     D K W  M+L SLC++   +GWS +
Sbjct: 490 HEEYQHFGEKSHDGKAWAEMYLLSLCDVLVTSGWSTF 526


>07_01_1214 -
           11583510-11583653,11585063-11585148,11585234-11585316,
           11585415-11585572,11587083-11587243,11588058-11588279,
           11588553-11588677,11589538-11589656,11589961-11590020,
           11590292-11590370,11591936-11592100,11592632-11592660,
           11593439-11593500,11594724-11594859,11594999-11595161,
           11595245-11595384,11597811-11597899,11598914-11599001,
           11599558-11599658,11599711-11599859,11600769-11600870,
           11601888-11601973,11602064-11602309
          Length = 930

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 674 SIGQSWTSLPKIGQPLSNSFTFGSMIPPFPQ 582
           S+ + WTS+  I  PLSN ++F  M  P PQ
Sbjct: 828 SLSEIWTSVLNITGPLSN-WSFSDMTLPDPQ 857


>06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300
          Length = 392

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 351 VSHVQTAEELFKSITGFNEVDVNLLEGVHTTYNSLACRFEIAP 479
           V+H+QTA E++ +++ F++   N+ E     +     +FE+ P
Sbjct: 82  VAHLQTAHEIWVALSNFHQGTNNIKELRRDLFKKEYIKFEMKP 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,413,040
Number of Sequences: 37544
Number of extensions: 412054
Number of successful extensions: 1002
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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