Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30807
(771 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33311| Best HMM Match : RIO1 (HMM E-Value=0) 103 2e-22
SB_5796| Best HMM Match : RIO1 (HMM E-Value=0) 73 3e-13
SB_54894| Best HMM Match : RuvB_C (HMM E-Value=2.3) 30 1.8
SB_36475| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39845| Best HMM Match : Methyltransf_10 (HMM E-Value=0) 29 4.2
SB_5071| Best HMM Match : RIO1 (HMM E-Value=0) 29 4.2
SB_26370| Best HMM Match : Drf_FH1 (HMM E-Value=5.2) 29 5.5
SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
>SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 490
Score = 103 bits (246), Expect = 2e-22
Identities = 42/85 (49%), Positives = 60/85 (70%)
Frame = +1
Query: 1 RLQKIGLNCPDMICLKKHILLMSFIGKDNKPAPKLRDIILRSDKWHSVYNEVVESMHKMY 180
R+QK+GL+CP ++ LKKHIL+MSFIGKD APKL++ +L + H Y + ++ M MY
Sbjct: 312 RMQKVGLSCPRVLLLKKHILVMSFIGKDQHAAPKLKNAMLTGSQLHLAYEQCIQMMCTMY 371
Query: 181 NVGHLIHADLSEYNILWWDNKCWFM 255
L+HADLS YN+LW + + WF+
Sbjct: 372 QKARLVHADLSAYNMLWHEGRVWFI 396
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +3
Query: 255 DVSQSVQPDHPNGLEFLLRDCRNIVNFFEKKGVSHVQTAEELFKSITGFNEVDVNLLE 428
DVSQSV+P HP+ LEFL RDCRN+V FF+KKGV+ V +A++LF + +E D+ L E
Sbjct: 397 DVSQSVEPIHPHALEFLYRDCRNVVEFFKKKGVAGVMSAQQLFIKV---SEADIPLSE 451
>SB_5796| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 1329
Score = 72.9 bits (171), Expect = 3e-13
Identities = 30/77 (38%), Positives = 50/77 (64%)
Frame = +1
Query: 1 RLQKIGLNCPDMICLKKHILLMSFIGKDNKPAPKLRDIILRSDKWHSVYNEVVESMHKMY 180
RL + G+ CP+ I L+ H+L+M F+G + PAP L+D+ L K +Y + V+ + ++
Sbjct: 277 RLHQAGIPCPEPIILRSHVLVMEFVGTEGWPAPLLKDVTLSESKARELYLQCVKILRDIF 336
Query: 181 NVGHLIHADLSEYNILW 231
L+HADLSE+N+L+
Sbjct: 337 WKSRLVHADLSEFNMLY 353
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +3
Query: 249 VYDVSQSVQPDHPNGLEFLLRDCRNIVNFFEKKGVSHVQTAEELFKSIT 395
V DVSQSV+ DHP+ LEFL +DC NI +FF+KK V V T ELF +T
Sbjct: 360 VIDVSQSVEHDHPHALEFLRKDCTNITDFFKKKEVC-VMTVRELFNFVT 407
>SB_54894| Best HMM Match : RuvB_C (HMM E-Value=2.3)
Length = 148
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 339 EKKGVSHVQTAEELFKSITGFNEVDVNLLEGV 434
E KG+ H+ + EEL+ S G E+ + L++ V
Sbjct: 6 ELKGLEHLDSLEELYISHNGIEEIKIKLIDTV 37
>SB_36475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 190 DQHCTFYAYSPQPHCKHCAIYLTLRLCLLAWGL 92
D HC +Y P ++C ++LT+ LL++G+
Sbjct: 336 DNHCCSNSYCLFPPKRYCIVFLTMLAFLLSYGV 368
>SB_39845| Best HMM Match : Methyltransf_10 (HMM E-Value=0)
Length = 493
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 400 KPVIDLKSSSAVCTCETPFFSKKLTILRQSRSKNSNPLGWSGCT 269
KP+ D+ C C PFFS + + + + PL S CT
Sbjct: 167 KPLKDVTQKITFCMCNPPFFSCEEEAMFGASRTDKRPLPSSVCT 210
>SB_5071| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 556
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +1
Query: 139 SVYNEVVESMHKMYNVGHLIHADLSEYNILWWD-NKCWFMMFLSLCNLTTLTG-WSFYFE 312
+VY++++E + K+ + G LIH D +E+N++ D ++ + F + +++ L W F +
Sbjct: 272 AVYSDLMELIVKLASFG-LIHCDFNEFNLMLNDKDQITVIDFPQMVSISHLNAQWYFDRD 330
Query: 313 IVVILSISLKK 345
+ I L++
Sbjct: 331 VQCIRDFFLRR 341
>SB_26370| Best HMM Match : Drf_FH1 (HMM E-Value=5.2)
Length = 190
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 199 ESDDQHCTFYAYSPQPHCKHCAIYL 125
E D HCT Y P HC C YL
Sbjct: 22 EFDASHCTQYPPVPAFHCTQCPQYL 46
>SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 734 PSSINISTIQRVLESCWKLISIGQSWTSLPKIGQPLSNSFT 612
P + N STI R+L + W++IS Q +S+ P + +FT
Sbjct: 262 PFNHNTSTIPRILHANWEIISSDQELSSI--FPSPPTTAFT 300
>SB_26833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 854
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 133 WHSVYNEVVESMHKMYNVGHLIHADLSEYNILWWDN 240
WH ++ ++V + ++ H++H DL+ NI+ +N
Sbjct: 307 WH-IFIQIVLGLRYIHKEKHIVHRDLTPNNIMLGEN 341
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,316,148
Number of Sequences: 59808
Number of extensions: 462085
Number of successful extensions: 1124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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