Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30807
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067624-5|AAC17564.4| 506|Caenorhabditis elegans Hypothetical ... 74 1e-13
Z22181-2|CAA80180.1| 510|Caenorhabditis elegans Hypothetical pr... 65 5e-11
AF067624-6|AAP68904.1| 264|Caenorhabditis elegans Hypothetical ... 41 8e-04
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 31 0.91
U39650-6|AAK39184.2| 102|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 4.8
Z83317-3|CAB05897.1| 217|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 28 6.4
>AF067624-5|AAC17564.4| 506|Caenorhabditis elegans Hypothetical
protein M01B12.5a protein.
Length = 506
Score = 74.1 bits (174), Expect = 1e-13
Identities = 34/85 (40%), Positives = 51/85 (60%)
Frame = +1
Query: 1 RLQKIGLNCPDMICLKKHILLMSFIGKDNKPAPKLRDIILRSDKWHSVYNEVVESMHKMY 180
R+ ++GL P LK H+L+M F+GKD PAP L++ L + +Y +V M ++Y
Sbjct: 217 RMHEVGLPVPKPHLLKGHVLVMDFLGKDGWPAPLLKNANLSQEDAEPMYVGLVRDMRRLY 276
Query: 181 NVGHLIHADLSEYNILWWDNKCWFM 255
L+HADLSE+N+L D K W +
Sbjct: 277 RECKLVHADLSEFNMLVHDGKLWII 301
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +3
Query: 249 VYDVSQSVQPDHPNGLEFLLRDCRNIVNFFEKKGVSHVQTAEELFKSI 392
+ DVSQSV+ DHP+ LEFL DC N+ FF + GV V + LF+ I
Sbjct: 300 IIDVSQSVEQDHPHALEFLRMDCNNVNKFFRELGVP-VLSVRRLFEVI 346
>Z22181-2|CAA80180.1| 510|Caenorhabditis elegans Hypothetical
protein ZK632.3 protein.
Length = 510
Score = 65.3 bits (152), Expect = 5e-11
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Frame = +1
Query: 1 RLQKIGLNCPDMICLKKHILLMSFIGKDNKPAPKLRDI---ILRSDKWHSVYNEVVESMH 171
R+ K GL CP + +++++L+MSF+G AP+L+++ D+ +VY++V M
Sbjct: 317 RMAKHGLPCPQPVKVRRNVLVMSFLGDQGLAAPRLKNVEWEFFTDDERRNVYDQVQSIMC 376
Query: 172 KMYNVGHLIHADLSEYNILWW-DNK 243
+MY L+HADLSE+N+L DNK
Sbjct: 377 RMYKECLLVHADLSEFNLLLTPDNK 401
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +3
Query: 249 VYDVSQSVQPDHPNGLEFLLRDCRNIVNFFEKKGVSHVQTAEELFKSITGFNEVD 413
V DVSQ++ HP L+FL RD +NI+ FF + G ++ T +LF IT + V+
Sbjct: 404 VIDVSQAMDLSHPRSLQFLTRDIQNIITFFTRIGTPNLPTYVQLFNLITDLDMVE 458
>AF067624-6|AAP68904.1| 264|Caenorhabditis elegans Hypothetical
protein M01B12.5b protein.
Length = 264
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +1
Query: 1 RLQKIGLNCPDMICLKKHILLMSFIGKDNKPAPKLRDIILRSD 129
R+ ++GL P LK H+L+M F+GKD PAP L++ L +
Sbjct: 217 RMHEVGLPVPKPHLLKGHVLVMDFLGKDGWPAPLLKNANLSQE 259
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = -3
Query: 208 DQHESDDQHCTFYAYSPQ---PHC---KHCAIYLTLRLCLLAWGLACYPSQ 74
DQ + H +F+AYS + P C K C++YL + + + W C P Q
Sbjct: 74 DQWQKYSFHMSFFAYSTRYVYPLCMMTKSCSLYLMVLITIERWIAVCRPLQ 124
>U39650-6|AAK39184.2| 102|Caenorhabditis elegans Hypothetical
protein C25A11.1 protein.
Length = 102
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 598 IMLPKVKLFDSGCPIFGNEVQD*PMEINFQ 687
I+ P K FDSG P+ G ++ P+EIN +
Sbjct: 59 IVFPATKAFDSGRPVNGRLSKEIPVEINLE 88
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = +1
Query: 205 DLSEYNILWWDNKCWFMMFLSLCNLTTLTGWSFYFEIVVILSISLKKRGSHMCKLQKNFL 384
+LS + +L W N C F + L T G+ + + + SI LKK +L+ ++L
Sbjct: 17 NLSRHEMLMWVNDCLQAHFTKIEQLHTGAGYCLFTDFLFPDSIQLKK-VKWNSRLELDWL 75
Query: 385 NQ*PALMKLM*TYWK 429
+ KL+ T WK
Sbjct: 76 SN----WKLVQTTWK 86
>Z83317-3|CAB05897.1| 217|Caenorhabditis elegans Hypothetical
protein F13G11.2 protein.
Length = 217
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 306 LRDCRNIVNFFEKKGVSHVQTAEELFKSITGFNEVD-VNLLEGVHTTYNSLACRFEIAPD 482
LRD R V++ + + T E I+G E+D VNL E H Y+ L+C + P+
Sbjct: 117 LRDMRGFVDWNKDVKI----TGNEFPVFISGNLELDTVNLPEMFHKPYSPLSCEKRLMPN 172
Query: 483 DN 488
N
Sbjct: 173 YN 174
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 716 STIQRVLESCWKLISIGQSWTSLPKIGQPLSNSFTFGSMIPPFPQ 582
S + +LE WK + G S S KIG+ L++ + ++ P F Q
Sbjct: 763 SRVSSILE-LWKAKASGHSEKSSRKIGESLADPVKYENLFPGFTQ 806
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,752,358
Number of Sequences: 27780
Number of extensions: 376979
Number of successful extensions: 996
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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