Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30807
(771 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37350.2 68418.m04487 RIO1 family protein similar to extragen... 81 1e-15
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 81 1e-15
At2g24990.1 68415.m02988 RIO1 family protein similar to extragen... 81 1e-15
At3g14890.2 68416.m01883 phosphoesterase identical to phosphoest... 29 3.4
At3g14890.1 68416.m01882 phosphoesterase identical to phosphoest... 29 3.4
At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2 (... 29 4.5
At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2 (PL... 28 5.9
At3g15730.1 68416.m01993 phospholipase D alpha 1 / PLD alpha 1 (... 28 7.9
>At5g37350.2 68418.m04487 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 385
Score = 80.6 bits (190), Expect = 1e-15
Identities = 43/127 (33%), Positives = 67/127 (52%)
Frame = +1
Query: 1 RLQKIGLNCPDMICLKKHILLMSFIGKDNKPAPKLRDIILRSDKWHSVYNEVVESMHKMY 180
RL G+ CP +I L+ H+L+M FIG+D AP+L+D L DK Y E++ M +Y
Sbjct: 94 RLHAAGIRCPAVILLRLHVLVMEFIGRDGWAAPRLKDAALSLDKLRECYLELIIQMRVLY 153
Query: 181 NVGHLIHADLSEYNILWWDNKCWFMMFLSLCNLTTLTGWSFYFEIVVILSISLKKRGSHM 360
L+H DLSEYNIL+++ + + +L +F E +S KK G +
Sbjct: 154 QKCKLVHGDLSEYNILYFEGHLYIIDVSQSVDLDHPLALNFLREDCDHVSDFFKKHGVAV 213
Query: 361 CKLQKNF 381
+++ F
Sbjct: 214 MTIRELF 220
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 80.6 bits (190), Expect = 1e-15
Identities = 43/127 (33%), Positives = 67/127 (52%)
Frame = +1
Query: 1 RLQKIGLNCPDMICLKKHILLMSFIGKDNKPAPKLRDIILRSDKWHSVYNEVVESMHKMY 180
RL G+ CP +I L+ H+L+M FIG+D AP+L+D L DK Y E++ M +Y
Sbjct: 240 RLHAAGIRCPAVILLRLHVLVMEFIGRDGWAAPRLKDAALSLDKLRECYLELIIQMRVLY 299
Query: 181 NVGHLIHADLSEYNILWWDNKCWFMMFLSLCNLTTLTGWSFYFEIVVILSISLKKRGSHM 360
L+H DLSEYNIL+++ + + +L +F E +S KK G +
Sbjct: 300 QKCKLVHGDLSEYNILYFEGHLYIIDVSQSVDLDHPLALNFLREDCDHVSDFFKKHGVAV 359
Query: 361 CKLQKNF 381
+++ F
Sbjct: 360 MTIRELF 366
>At2g24990.1 68415.m02988 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 537
Score = 80.6 bits (190), Expect = 1e-15
Identities = 43/127 (33%), Positives = 67/127 (52%)
Frame = +1
Query: 1 RLQKIGLNCPDMICLKKHILLMSFIGKDNKPAPKLRDIILRSDKWHSVYNEVVESMHKMY 180
RL G+ CP +I L+ H+L+M FIG+D AP+L+D L DK Y E++ M +Y
Sbjct: 241 RLHAAGIRCPAVILLRLHVLVMEFIGRDGWAAPRLKDAALSLDKLRECYLELIIQMRVLY 300
Query: 181 NVGHLIHADLSEYNILWWDNKCWFMMFLSLCNLTTLTGWSFYFEIVVILSISLKKRGSHM 360
L+H DLSEYNIL+++ + + +L +F E +S KK G +
Sbjct: 301 QKCKLVHGDLSEYNILYFEGHLYIIDVSQSVDLDHPLALNFLREDCDHVSDFFKKHGVAV 360
Query: 361 CKLQKNF 381
+++ F
Sbjct: 361 MTIRELF 367
>At3g14890.2 68416.m01883 phosphoesterase identical to
phosphoesterase [Arabidopsis thaliana] GI:21630064;
contains Pfam profile PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region
Length = 638
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 115 ILRSDKWHSVYNEVVESMHKMYNVGHLIHADLSEYNILWWDNK 243
I+ +D W +Y + E + +++ G+ + +E NI W NK
Sbjct: 482 IVGADAWSLMYPSIPEKLQSLHDQGYKLVIFTNESNIDRWKNK 524
>At3g14890.1 68416.m01882 phosphoesterase identical to
phosphoesterase [Arabidopsis thaliana] GI:21630064;
contains Pfam profile PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region
Length = 694
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 115 ILRSDKWHSVYNEVVESMHKMYNVGHLIHADLSEYNILWWDNK 243
I+ +D W +Y + E + +++ G+ + +E NI W NK
Sbjct: 538 IVGADAWSLMYPSIPEKLQSLHDQGYKLVIFTNESNIDRWKNK 580
>At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2
(PLDALPHA2) (PLD2) / choline phosphatase 2 identical to
phospholipase D alpha 2 ( PLD alpha 2) SP:Q9SSQ9 from
[Arabidopsis thaliana]
Length = 810
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 238 NKCWFMMFLSLCN---LTTLTGWSFYFEIVVILSISLKKRG 351
++CW +F ++ N L +TGWS Y EI ++ K+G
Sbjct: 209 HRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKQG 249
>At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2
(PLDBETA2) / PLDdelta1 identical to SP|O23078
Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD
beta 2) (PLDdelta1) [Arabidopsis thaliana]; contains
Pfam profiles: PF00614 phospholipase D.active site
motif, PF00168 C2 domain
Length = 927
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 241 KCWFMMFLSLC---NLTTLTGWSFYFEIVVILSISLKKRGSHMCKL 369
KCW MF ++C L +TGWS + + ++ K+ S C+L
Sbjct: 322 KCWHDMFHAICQARRLIYITGWSVWHNVRLVRD---KEDPSSECRL 364
>At3g15730.1 68416.m01993 phospholipase D alpha 1 / PLD alpha 1
(PLDALPHA1) (PLD1) / choline phosphatase 1 identical to
SP:Q38882 Phospholipase D alpha 1 (EC 3.1.4.4)
(AtPLDalpha1) (PLD alpha 1) (Choline phosphatase 1)
(Phosphatidylcholine-hydrolyzing phospholipase D 1)
(PLDalpha) [Arabidopsis thaliana]
Length = 810
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 241 KCWFMMFLSLCN---LTTLTGWSFYFEIVVILSISLKKRG 351
+CW +F ++ N L +TGWS Y EI ++ K G
Sbjct: 210 RCWEDIFDAISNAKHLIYITGWSVYAEIALVRDSRRPKPG 249
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,697,509
Number of Sequences: 28952
Number of extensions: 346680
Number of successful extensions: 971
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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