Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30806
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 130 2e-31
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 124 1e-29
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 31 0.15
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 3.3
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 4.3
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 5.7
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 26 5.7
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 26 7.6
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 7.6
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 130 bits (314), Expect = 2e-31
Identities = 74/156 (47%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Frame = +1
Query: 256 IEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMK 429
IEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ ESKVFY KMK
Sbjct: 68 IEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYKMK 127
Query: 430 GDYYRYLAEVATGETRHSVVEDSQKASKMLLKSARRKCSPHTP*GWVWR*ISQFFYYEIL 609
GDYYRYLAE A GE R + S + K + A + +P P FYYEIL
Sbjct: 128 GDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEIL 187
Query: 610 NSPDKACQLAKTGFRRLPIRRNWTH*TEIRYQDSTL 717
NSPD+AC LAK F + +E Y+DSTL
Sbjct: 188 NSPDRACYLAKQAFDEAISELDSL--SEESYKDSTL 221
Score = 86.6 bits (205), Expect = 4e-18
Identities = 41/69 (59%), Positives = 52/69 (75%)
Frame = +2
Query: 62 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 241
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 242 RVIS*LNRK 268
R++S + +K
Sbjct: 63 RIVSSIEQK 71
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 124 bits (300), Expect = 1e-29
Identities = 73/156 (46%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Frame = +1
Query: 256 IEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMK 429
IEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ ESKVFY KMK
Sbjct: 67 IEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYKMK 126
Query: 430 GDYYRYLAEVATGETRHSVVEDSQKASKMLLKSARRKCSPHTP*GWVWR*ISQFFYYEIL 609
GDYYRYLAE GE + S +A K A + P P FYYEIL
Sbjct: 127 GDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEIL 186
Query: 610 NSPDKACQLAKTGFRRLPIRRNWTH*TEIRYQDSTL 717
+SP+ AC LAK F + +E Y+DSTL
Sbjct: 187 DSPESACHLAKQVFDEAISELDSL--SEESYKDSTL 220
Score = 85.4 bits (202), Expect = 9e-18
Identities = 42/70 (60%), Positives = 54/70 (77%)
Frame = +2
Query: 59 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 238
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 239 WRVIS*LNRK 268
WR+IS + +K
Sbjct: 61 WRIISSIEQK 70
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.5 bits (68), Expect = 0.15
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 62 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 232
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 233 SSWRVIS 253
S+W S
Sbjct: 62 STWATFS 68
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 361 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 498
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 4.3
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +1
Query: 259 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 435
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 436 YYR-YLAEV 459
+R Y+ E+
Sbjct: 100 SFRDYVGEL 108
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 262 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 387
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 373 HLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQ-KASK 513
H SNP S K KG++ Y A G ++ +DS K SK
Sbjct: 225 HTSKTYSNPSSFATRKKEKGEHLSYAEAAAVGTQAKNIKKDSNVKCSK 272
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 247 HFLIEQKTEGSERKQQMAKEYRVKVEKELR 336
HFLI +KT+ S + K+ VK ++E++
Sbjct: 30 HFLIRRKTQLSNSDKSSEKKDEVKKQREVK 59
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 169 FDAGFRDFLHRGRHVVISLSLFGQF-GTLHQFF 74
+D +RD+ + + I+L +FG F G +H+ F
Sbjct: 400 YDWSYRDWTYFNNTMTIALCVFGVFAGAMHRVF 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,586,915
Number of Sequences: 5004
Number of extensions: 73474
Number of successful extensions: 246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -