Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30806
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    25   0.86 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    25   0.86 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.0  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
 Frame = +1

Query: 211 ECRRCP-----TVIMACHFLIEQKTE---GSERKQQMAKEYRVKVEKELREICYDV 354
           +C++C       +     FL+E K E       K    K+YRVK E+E +++  +V
Sbjct: 75  DCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEEEAKKLGINV 130


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
 Frame = +1

Query: 211 ECRRCP-----TVIMACHFLIEQKTE---GSERKQQMAKEYRVKVEKELREICYDV 354
           +C++C       +     FL+E K E       K    K+YRVK E+E +++  +V
Sbjct: 75  DCKKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEEEAKKLGINV 130


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 226 GTYDILISN*KEVPLLVAKFDAGFRDFLHRGRHV 125
           G +D+ + + + V  L     A F    HRG H+
Sbjct: 183 GAFDVTLESGERVTFLDTPGHAAFISMRHRGAHI 216


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 613 NLISHN-KRTEKFNARPSLMGCVGCIFALLISKASWML 503
           N   H+ KR    + R  L+ C G +F  ++    WM+
Sbjct: 751 NASKHSAKRPSFISPRSQLIICSGLVFVQILINGVWMI 788


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +1

Query: 259 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 438
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 439 YRY 447
           + Y
Sbjct: 500 FDY 502


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +2

Query: 671  GTGHIERRFVTKILR*IMAVAAEDNLNAFWTSEHSKGDWRTEPFPKGGG 817
            G+G +    +T+ +  + ++  ED   A  TS+  +  W+  P     G
Sbjct: 1094 GSGPLSEPLLTQTMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNG 1142


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +2

Query: 671  GTGHIERRFVTKILR*IMAVAAEDNLNAFWTSEHSKGDWRTEPFPKGGG 817
            G+G +    +T+ +  + ++  ED   A  TS+  +  W+  P     G
Sbjct: 1090 GSGPLSEPLLTQTMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNG 1138


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/34 (20%), Positives = 17/34 (50%)
 Frame = -3

Query: 622 CLANLISHNKRTEKFNARPSLMGCVGCIFALLIS 521
           C    I+H +    F   P+++ C+G +  + ++
Sbjct: 501 CYQLAINHIRWNSAFAIAPAVISCLGIVATMAVA 534


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/34 (20%), Positives = 17/34 (50%)
 Frame = -3

Query: 622 CLANLISHNKRTEKFNARPSLMGCVGCIFALLIS 521
           C    I+H +    F   P+++ C+G +  + ++
Sbjct: 591 CYQLAINHIRWNSAFAIAPAVISCLGIVATMAVA 624


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,981
Number of Sequences: 438
Number of extensions: 4865
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)