Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30805
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 30 0.41
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 27 2.2
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 2.9
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 27 2.9
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 27 2.9
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 27 3.8
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 25 8.9
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 25 8.9
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 25 8.9
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 29.9 bits (64), Expect = 0.41
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -1
Query: 424 NRNEAVEQMSQV--RNRNAVHRELSRIHTPFDEVSAHHFSRSLLEGLIFLTNRII-ERPQ 254
N N A++Q+++V RNR H E+ +E + + + T+ + PQ
Sbjct: 413 NSNSAMDQLAKVNERNRRRNHTEIRLAEQRMNEERRRLSAAATATPMSAPTSVLTGTSPQ 472
Query: 253 WLPSVSATTISTPSLELHPSE 191
PS+S + +STP +L+PSE
Sbjct: 473 PSPSLSTSIMSTP--KLNPSE 491
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 583 PLQRVTFGAADAVGKQANYLGFKRVL*PFNWVAGYIWAYSLSFLLSTRPKTQAG 744
PL T G + G A Y +K + +G+I+A SL L T PKT G
Sbjct: 180 PLLGPTIGPVVS-GFIAEYTTYKWIFWSTTIFSGFIFALSLPLLAETYPKTLLG 232
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 470 SFQALQRSCSGRETSRFLSTIPGRPCRNLKRV 565
S + + CSG E+ + S IPG C KR+
Sbjct: 847 SIDDIFKFCSGSESEVYASKIPGELCNPSKRL 878
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 433 TTTNRNEAVEQMSQVRNRNAVHRE 362
TTTN+NE++ S RNR + +E
Sbjct: 140 TTTNKNESLPGTSLKRNREIIEKE 163
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 358 SRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERP 257
S + PFD +S+ S+ LEGL N+ P
Sbjct: 390 SNFYQPFDSISSMVLSKQALEGLELFVNQTDHTP 423
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 287 NKPFKQTSGKVVG--AYFVEWGVYPRKFPVDRVPVPNLT--HLLYGFIPICGGDGINDSL 454
+K FK+ + K V A + Y + + +PN T H+ +P GDGI L
Sbjct: 10 SKVFKRNNFKYVAIAASSIGLAAYHIRKDAIALDIPNSTYQHVSKNRVPPTDGDGITKRL 69
Query: 455 KEIE 466
KE E
Sbjct: 70 KEFE 73
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 548 RNLKRVIVPGTSPYKG*LSGQLMQLENK 631
RNL R+I P +G +SG + +L+ K
Sbjct: 742 RNLSRIITPIYDDEEGNVSGHIYELDGK 769
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 564 LSFLERALTKGNFRGS*CSWKT-SELLGL*KGPLTFQLGGWVHLGL 698
+SFL +LTK + G + K + LL P T L W+HLGL
Sbjct: 259 ISFLTESLTK--YAGDPVARKILTYLLREASRPYTKMLNEWIHLGL 302
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 8.9
Identities = 21/79 (26%), Positives = 31/79 (39%)
Frame = -3
Query: 254 MATISVSYYDFDALARAASV*VAELDLHLISSALLHFESGRCGAAGTAPDFLLDSSRTLD 75
++T+ + D L R +EL L LI L + RC A+ +L LD
Sbjct: 25 VSTVDLLTLDITELERRTHCSQSEL-LQLIEQISLLLQPVRCSASKVTSKYLTTGDVKLD 83
Query: 74 LSAASPVHTFQLTETSAAS 18
+ + QLTE S
Sbjct: 84 ETLHGGIPVGQLTEICGES 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,193
Number of Sequences: 5004
Number of extensions: 69759
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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