Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30805
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0509 + 10051965-10052079,10052467-10052672                       31   1.3  
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336...    30   2.3  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    29   4.0  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    29   5.3  
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510...    28   7.0  
03_05_0038 + 20121924-20122080,20123182-20123843                       28   7.0  
02_03_0099 + 15206282-15206917                                         28   7.0  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    28   9.3  

>09_02_0509 + 10051965-10052079,10052467-10052672
          Length = 106

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/82 (30%), Positives = 33/82 (40%)
 Frame = +3

Query: 111 SGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSH*GLSIILLVRKI 290
           + AGS+  AA  V       M+    N+   S   G E VVA+ D               
Sbjct: 7   AAAGSSCLAAVIVVAAAMSLMRPRSSNASSASGVRGQEDVVAECDMGTSRADATAAAPPP 66

Query: 291 SPSSRLREKWWALTSSNGVCIL 356
             S RLR  WWA+  +N V +L
Sbjct: 67  VSSKRLR--WWAVVLANIVVVL 86


>02_05_0367 -
           28331479-28332358,28332432-28332988,28333454-28333671,
           28333748-28333831,28334199-28334373,28334572-28334574
          Length = 638

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 328 LLRRMGCVS*KVPCGPRSGSEPDSFALRLH 417
           L+R +GC +  VPC P SG+E   F + L+
Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202


>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
            24779422-24780354,24780456-24780938,24780969-24781082,
            24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 387  GTGTRSTGNFLGYTPHSTK*APTTFPEVCLKG 292
            G GT S G+   YT H  K  P     +CL+G
Sbjct: 1004 GEGTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 251  PLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGVYPRKFPVDRVPV-PNLTHLLY 409
            P+  L   +G  N+P +  SGK V   +     Y +KF  +  PV  +L H L+
Sbjct: 1686 PVTDLLQMMGHANRPLQDDSGKCVILCYAPRKEYYKKFLFEAFPVESHLQHFLH 1739


>10_08_0827 +
           20849312-20849833,20850352-20850417,20850786-20851082,
           20851215-20851412,20851748-20851849,20851960-20852100,
           20852171-20852278,20852588-20852670,20852829-20852991,
           20853636-20853650,20853968-20854093
          Length = 606

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 353 PRKFPVDRVPVPNLTHLLYGFIPICGG 433
           P +F ++  PVPN T+  Y FIP  GG
Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513


>03_05_0038 + 20121924-20122080,20123182-20123843
          Length = 272

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 631 LVFQLHQLPRKLPFVRARSRNDNPFEVSAG 542
           +V+   + PR   +VRA+SR DNP   S G
Sbjct: 167 VVWHQERQPRTCGYVRAKSRADNPPSTSLG 196


>02_03_0099 + 15206282-15206917
          Length = 211

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 111 SGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSH*GL-SIILLV 281
           + A S   AA   + GGRY + +   ++   S++E  E+VV + D +  GL  + LLV
Sbjct: 52  AAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEADEAMAGLHGVDLLV 109


>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
            31587535-31588097,31588250-31589913,31589956-31590066,
            31590152-31591181,31591234-31591406,31591535-31591814,
            31592275-31592331
          Length = 1434

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 542  AAQGSWIETLKFHGRCMNVVVLENCPQ--FLS 453
            A  GSW+  +  H R +  + L +CPQ  FLS
Sbjct: 1114 AISGSWLTEMLSHVRSLKTLKLHDCPQIKFLS 1145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,524,669
Number of Sequences: 37544
Number of extensions: 516295
Number of successful extensions: 1525
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)