Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30805
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   31   1.3  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_6762| Best HMM Match : SNF (HMM E-Value=0)                          29   4.1  
SB_31095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  

>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1227

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
 Frame = -1

Query: 439 AITTTNRNEA-VEQMSQVRNRNAVHRELSRI--HTPFDEVS--AHHFSRSLLEGLIF--L 281
           A +T N NE  +++ +  R +   + E   +   TP D  S   HH SR  L+ +    +
Sbjct: 312 ANSTVNINETQIKRETLERQKTTENTEELPVSTETPLDVTSFKPHHASREKLQSINDRRI 371

Query: 280 TNRIIERPQWLPSVSATTISTPSLELHPSELQSST 176
            ++  ERP W+     +T + P +E   S++   T
Sbjct: 372 PDQSQERPSWVDEWFTSTTAKPEVERRDSDVNDET 406


>SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 376 AVHRELSRIHTPFDEVSAHHFSRSLLEGLIFL-TNRIIER 260
           ++H  + + H   +E     +SR +LEG+++L TNRI+ R
Sbjct: 2   SIHEHIKQ-HGALNESLTRKYSRQILEGILYLHTNRIVHR 40


>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 147 VKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSH 254
           V  G  YQ+ V+ CNS GC  S     V  D  G +
Sbjct: 275 VLPGTTYQISVQACNSAGCGESSRAVNVTTDKKGDN 310


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 619  LHQLPRKLPFVRARSRNDNPFEVSAGPPRDRG*K 518
            L + PRKLP +R RS ND+     A    D G K
Sbjct: 1038 LRKSPRKLPVIRQRSSNDSTKPSQASDTSDIGGK 1071


>SB_6762| Best HMM Match : SNF (HMM E-Value=0)
          Length = 507

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +2

Query: 581 SPYKG*LSGQLMQLENKRITWALKGSFNLS-IGW---LGTFGPIPFLSF 715
           SP +  L  + +QLE++R TW  K  F LS IG+   LG     P+L +
Sbjct: 25  SPQESELDEREVQLEDERETWGKKADFLLSCIGFAVGLGNVWRFPYLCY 73


>SB_31095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 538 AALQKPQKGYRSWNEPLQRVTFG 606
           A L+K  KG + WNE  QR++ G
Sbjct: 21  AILEKKNKGKKIWNEDFQRISTG 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,600,593
Number of Sequences: 59808
Number of extensions: 541734
Number of successful extensions: 1337
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)