Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30805
         (760 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051865-1|AAK93289.1|  793|Drosophila melanogaster LD36057p pro...    31   1.7  
AE014297-336|AAF51966.1|  793|Drosophila melanogaster CG2102-PA ...    31   1.7  
D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase...    29   9.1  
AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymera...    29   9.1  

>AY051865-1|AAK93289.1|  793|Drosophila melanogaster LD36057p
           protein.
          Length = 793

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = -1

Query: 280 TNRIIERPQWLPSVSATTISTPSLELHPSELQSSTCI*YLPPFFTLKAADVALPAPLQTS 101
           +N I  +PQ  P  +A T STP+   HPS L +   +  LPP   L          L TS
Sbjct: 97  SNLIAFQPQQYPGATAATPSTPN--SHPSNLVNQMLLQSLPPLTQLMLQQQQQQHLLTTS 154

Query: 100 FLI 92
            L+
Sbjct: 155 NLL 157


>AE014297-336|AAF51966.1|  793|Drosophila melanogaster CG2102-PA
           protein.
          Length = 793

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = -1

Query: 280 TNRIIERPQWLPSVSATTISTPSLELHPSELQSSTCI*YLPPFFTLKAADVALPAPLQTS 101
           +N I  +PQ  P  +A T STP+   HPS L +   +  LPP   L          L TS
Sbjct: 97  SNLIAFQPQQYPGATAATPSTPN--SHPSNLVNQMLLQSLPPLTQLMLQQQQQQHLLTTS 154

Query: 100 FLI 92
            L+
Sbjct: 155 NLL 157


>D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase
           alpha protein.
          Length = 1505

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 714 KERKGIGPNVPSHPIERLKD-PFKAQVIRLFSNCI 613
           K++KG+ PN    P E  K    KA +  LFSN +
Sbjct: 100 KKKKGVAPNSKKRPRENAKPVTGKASIKNLFSNAV 134


>AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymerase
           alpha 180K subunit protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 714 KERKGIGPNVPSHPIERLKD-PFKAQVIRLFSNCI 613
           K++KG+ PN    P E  K    KA +  LFSN +
Sbjct: 100 KKKKGVAPNSKKRPRENAKPVTGKASIKNLFSNAV 134


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,028,168
Number of Sequences: 53049
Number of extensions: 810714
Number of successful extensions: 2361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2361
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3478915869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)