Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30805
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   8.3  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   8.3  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   8.3  
AL132876-21|CAD21671.1|  418|Caenorhabditis elegans Hypothetical...    28   8.3  

>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 424  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 305
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 424  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 305
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 424  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 305
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>AL132876-21|CAD21671.1|  418|Caenorhabditis elegans Hypothetical
           protein Y105E8A.25 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 53  GPATRPTSPESCSNQEGSLERCRQRH 130
           G   RP +P S +N   SL  C Q H
Sbjct: 11  GGTARPVTPRSIANSLDSLSECAQHH 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,057,759
Number of Sequences: 27780
Number of extensions: 401977
Number of successful extensions: 1163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)