Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30805
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62360.1 68416.m07005 expressed protein                             29   2.5  
At5g55030.2 68418.m06856 expressed protein                             29   3.4  
At5g55030.1 68418.m06855 expressed protein                             29   3.4  
At1g66210.1 68414.m07515 subtilase family protein contains simil...    29   4.4  
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF...    28   5.9  
At5g17310.2 68418.m02028 UTP--glucose-1-phosphate uridylyltransf...    28   7.7  
At1g64780.1 68414.m07345 ammonium transporter 1, member 2 (AMT1....    28   7.7  

>At3g62360.1 68416.m07005 expressed protein
          Length = 1227

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 120 GSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSH 254
           G+    +  +K GG   + VEL +SDG  S + V  V+  +DGS+
Sbjct: 138 GAVGGESCLIKNGGPADVNVELLSSDG--SEDPVASVLTSSDGSY 180


>At5g55030.2 68418.m06856 expressed protein
          Length = 639

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 617 QLENKRITWALKGSFNLSIGWLGTFGPIP----FLSFFPPVQKPKPGSGF 754
           ++ ++RI  AL   F    GW+G + P+P          P + PK  S F
Sbjct: 179 KIASQRIEQALPADFKFGRGWVGEYEPLPTPVLLFETCTPKEPPKKASVF 228


>At5g55030.1 68418.m06855 expressed protein
          Length = 639

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 617 QLENKRITWALKGSFNLSIGWLGTFGPIP----FLSFFPPVQKPKPGSGF 754
           ++ ++RI  AL   F    GW+G + P+P          P + PK  S F
Sbjct: 179 KIASQRIEQALPADFKFGRGWVGEYEPLPTPVLLFETCTPKEPPKKASVF 228


>At1g66210.1 68414.m07515 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 759

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -1

Query: 340 FDEVSAHHFSRSLLEGLIFLTNRIIERPQWLPSVSATTISTPSLELHPS 194
           +D +S    S  ++ G++ L  +  +RP W P+   + + T +L+  PS
Sbjct: 532 YDFMSGTSMSTPVVSGIVALLRK--KRPDWSPAAIRSALVTTALQTDPS 578


>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
           PF02984: Cyclin, C-terminal domain
          Length = 1025

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +1

Query: 556 QKGYRSWNEPLQRVTFGAADAVGKQANYLGFKRVL*PFNWVAGYIWAYSLS 708
           ++ Y +WN+PL  V   + D +  + + +  +        +   IWA S+S
Sbjct: 600 RQAYSTWNQPLTSVVDNSVDLLNSELDVVHIRLSSHQIGLLLSSIWAQSIS 650


>At5g17310.2 68418.m02028 UTP--glucose-1-phosphate
           uridylyltransferase, putative / UDP-glucose
           pyrophosphorylase, putative / UGPase, putative strong
           similarity to SP|P19595 UTP--glucose-1-phosphate
           uridylyltransferase (EC 2.7.7.9) (UDP-glucose
           pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
           contains Pfam profile PF01704: UTP--glucose-1-phosphate
           uridylyltransferase
          Length = 470

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 454 QTVIDAITTTNRNEA---VEQMSQVRNRNAVHRELSRIHTPFDEV 329
           ++ +D +T  + NE    +  +S+  +  A H E S+I TP DE+
Sbjct: 13  KSAVDGLTEMSENEKSGFINLVSRYLSGEAQHIEWSKIQTPTDEI 57


>At1g64780.1 68414.m07345 ammonium transporter 1, member 2 (AMT1.2)
           nearly identical to SP|Q9ZPJ8 Ammonium transporter 1,
           member 2 (AtAMT1;2) {Arabidopsis thaliana}
          Length = 514

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 602 SGQLMQLENKRITWALKGSFNLSIGWLGTFGPIPFLSFFPPVQKPKPGSG 751
           SG+ + L     +  + G+F L  GW G F P  FL+      K +P  G
Sbjct: 243 SGRSVALRGHSASLVVLGTFLLWFGWYG-FNPGSFLTILKGYDKSRPYYG 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,521,642
Number of Sequences: 28952
Number of extensions: 393838
Number of successful extensions: 1113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)