Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30804
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 127 1e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 125 3e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 124 6e-29
03_02_0593 + 9693125-9693127,9693632-9693733,9694020-9694135,969... 30 2.3
02_04_0335 + 22117902-22119869 29 3.0
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 29 5.3
06_03_0290 - 19193707-19193752,19193822-19194090 28 7.0
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 28 7.0
12_01_0060 - 499291-501228 28 9.3
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 28 9.3
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 9.3
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 127 bits (306), Expect = 1e-29
Identities = 58/92 (63%), Positives = 74/92 (80%)
Frame = +1
Query: 235 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 414
+ + +I+L AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 415 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
CIGFT + ++TCYAQ +Q+R IR+KM E
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (239), Expect = 1e-21
Identities = 47/65 (72%), Positives = 56/65 (86%)
Frame = +2
Query: 56 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 235
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 236 RSFRK 250
+++RK
Sbjct: 79 QAYRK 83
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +3
Query: 492 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEK 596
+++ V I+ ++ +L+E+V+K IP+ I K+IEK
Sbjct: 165 RRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEK 199
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 125 bits (302), Expect = 3e-29
Identities = 57/92 (61%), Positives = 73/92 (79%)
Frame = +1
Query: 235 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 414
+ + +++L AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 415 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
CIGFT + ++TCYAQ +Q+R IR+KM E
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (240), Expect = 1e-21
Identities = 47/65 (72%), Positives = 57/65 (87%)
Frame = +2
Query: 56 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 235
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 236 RSFRK 250
+++RK
Sbjct: 79 QAYRK 83
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 492 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKGLPMASTLWGDVCIRK 644
+++ V I+ + +L+E+V+K IP+ I K+IEK L +V IRK
Sbjct: 165 RRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPL-QNVFIRK 214
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 124 bits (300), Expect = 6e-29
Identities = 57/92 (61%), Positives = 73/92 (79%)
Frame = +1
Query: 235 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 414
+ + +I+L AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 415 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
CIGFT + ++TCYAQ +Q+R IR+KM E
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (240), Expect = 1e-21
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +2
Query: 56 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 235
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 236 RSFRK 250
+++RK
Sbjct: 79 QAYRK 83
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +3
Query: 492 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEK 596
+++ V I+ ++ +L+E+V+K IP+ I K+IEK
Sbjct: 165 RRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEK 199
>03_02_0593 +
9693125-9693127,9693632-9693733,9694020-9694135,
9694235-9694357,9694448-9694505,9694733-9694771
Length = 146
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 158 KIASEGLKGRVFEVSLADLQADTDAERSFR--KFN*SPNMCKDVMCSATSTAWTSQPISS 331
K + K R LA AD DA++ R +F S N+ K + A SS
Sbjct: 62 KAEEQKRKSRAERFGLASSSADEDAKKKARLERFGQSTNVDKGEEEKRKARALRFAETSS 121
Query: 332 GGWLKNGRLSSKP 370
G +NG+ SSKP
Sbjct: 122 GPSQENGKDSSKP 134
>02_04_0335 + 22117902-22119869
Length = 655
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 629 IAPEGRCHGQAFLDVLGNGVRNQLVHHL 546
+ PEGR HG L +LG RN V L
Sbjct: 628 VVPEGRVHGGGLLSLLGGSFRNVDVDEL 655
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +1
Query: 334 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCES 513
W++++W+ + T+G L V G +Q+ ++ + I KK E
Sbjct: 535 WIMEQWENNYYISAIAGATNGSSLVVMSKG----TPYTQQSYKVSESFPFKWINKKWKEG 590
Query: 514 LHATSLTLNSGRW 552
H TS+T RW
Sbjct: 591 FHVTSMTTAGSRW 603
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 290 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 379
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 739 LPPFALQPPSAVESSNQLRRSRNGPSFQHFAPFRMQTSP 623
LPP A+QP NQ+ R + P++ H+ P + P
Sbjct: 408 LPPQAMQPQQHPPVQNQM-RPQTPPNYPHYQPHQSLNPP 445
>12_01_0060 - 499291-501228
Length = 645
Score = 27.9 bits (59), Expect = 9.3
Identities = 27/83 (32%), Positives = 36/83 (43%)
Frame = -3
Query: 551 HLPEFRVSDVACNDSHIFFLIALT*VCWA*HVLRWLKESLLVKPMQKTRRTYPSVVFTSM 372
HL R+ + N SH+ F IAL H LR E L + ++ T P V+ TS+
Sbjct: 55 HLHALRLHCLLPNPSHLTFPIALKSASRLPHPLR-AGEQLHARSLKLPSHTNPHVL-TSL 112
Query: 371 LASMRVCHFLTIHLSLSVVRSMP 303
L C L H + V MP
Sbjct: 113 LTLYARCGLL--HRAQRVFDEMP 133
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 623 PEGRCHGQAFLDVLGNGVRN 564
PEGR HG L +LG RN
Sbjct: 698 PEGRVHGGGLLSLLGGSFRN 717
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 199 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 107
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,647,369
Number of Sequences: 37544
Number of extensions: 482785
Number of successful extensions: 1374
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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