Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30804
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          78   7e-15
SB_21896| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)                     28   9.5  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = +1

Query: 355 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVD 53



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/51 (58%), Positives = 37/51 (72%)
 Frame = +3

Query: 492 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKGLPMASTLWGDVCIRK 644
           +K+ V IITR+V+ ++L+EVVNKLIPDSI KDIEK       L  DV IRK
Sbjct: 48  RKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPL-HDVHIRK 97


>SB_21896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -1

Query: 757 SNFVSGLPPFALQPPSAVESSNQLRRSRNGPSFQHFAPFRMQTSPQRVDAMG 602
           SN +  LPPF L   + V    +LR  RNGPS +  +  R  T P R   +G
Sbjct: 256 SNSIEILPPFGLSDHNVVVLRPKLRSPRNGPSRKSIS--RRDTRPSRKLELG 305


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -2

Query: 249 LRKDLSASVSACRSARETSKTLPFNPSEAIFVPWVRLTSVVPTCLLLNIDGALTSYQSLR 70
           LRK L    S  +  RE  + L FNP E+ +V            L + ++  +   +SL+
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYVLQAESLKKANNVLQIELEELIKKEKSLK 361


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 53  IVDPFTRKDWYDVKAPSMFSKRQ 121
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 531 NSELREVVNKLIPDSIAKDIEKGLPMASTL 620
           +SELR  + +L P +  K +EK +P+ S L
Sbjct: 35  DSELRRTIRRLWPKTSKKTLEKMIPLQSVL 64


>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 964

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
 Frame = -3

Query: 653 LCTFS----DANIAPEG--RCHGQAFLDVLGNGVRN-----QLVHHLPEFRVSDVACNDS 507
           LCTFS    D  +   G     G      LG+G  N     ++V  L  F V D++C  S
Sbjct: 424 LCTFSKEHLDDLLTDRGILMTFGSGTYGCLGHGTTNYVSQAKIVEDLLGFEVEDISCGSS 483

Query: 506 HIFFLIA 486
           HI  + A
Sbjct: 484 HIMAVTA 490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,646,598
Number of Sequences: 59808
Number of extensions: 541865
Number of successful extensions: 1460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)