Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30804
         (760 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   142   6e-34
AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   142   6e-34
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   142   6e-34
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   142   6e-34
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   137   2e-32
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   109   5e-24

>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  142 bits (343), Expect = 6e-34
 Identities = 66/90 (73%), Positives = 74/90 (82%)
 Frame = +1

Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
           F + +LIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCI
Sbjct: 84  FRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCI 143

Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
           GFT KD  SQRKTCYAQ +QVR IR +M +
Sbjct: 144 GFTAKDQQSQRKTCYAQQSQVRKIRARMTD 173



 Score =  116 bits (279), Expect = 4e-26
 Identities = 53/67 (79%), Positives = 59/67 (88%)
 Frame = +2

Query: 53  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 232
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 233 ERSFRKF 253
           ERSFRKF
Sbjct: 81  ERSFRKF 87


>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  142 bits (343), Expect = 6e-34
 Identities = 66/90 (73%), Positives = 74/90 (82%)
 Frame = +1

Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
           F + +LIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCI
Sbjct: 84  FRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCI 143

Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
           GFT KD  SQRKTCYAQ +QVR IR +M +
Sbjct: 144 GFTAKDQQSQRKTCYAQQSQVRKIRARMTD 173



 Score =  116 bits (279), Expect = 4e-26
 Identities = 53/67 (79%), Positives = 59/67 (88%)
 Frame = +2

Query: 53  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 232
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 233 ERSFRKF 253
           ERSFRKF
Sbjct: 81  ERSFRKF 87



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 32/70 (45%), Positives = 41/70 (58%)
 Frame = +3

Query: 510 IITRDVTNSELREVVNKLIPDSIAKDIEKGLPMASTLWGDVCIRKGAKC*NEGPFRDLRS 689
           IIT +V+ ++L+++VNKL  DSIAKDIEK       L  DV IRK  K   +  F D+  
Sbjct: 174 IITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPL-HDVYIRK-VKVLKKPRF-DVSK 230

Query: 690 WLELSTAEGG 719
            LEL    GG
Sbjct: 231 LLELHGDGGG 240


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  142 bits (343), Expect = 6e-34
 Identities = 66/90 (73%), Positives = 74/90 (82%)
 Frame = +1

Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
           F + +LIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCI
Sbjct: 34  FRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCI 93

Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
           GFT KD  SQRKTCYAQ +QVR IR +M +
Sbjct: 94  GFTAKDQQSQRKTCYAQQSQVRKIRARMTD 123



 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 21/24 (87%), Positives = 21/24 (87%)
 Frame = +2

Query: 182 GRVFEVSLADLQADTDAERSFRKF 253
           GRVFEVSLADLQ D D ERSFRKF
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKF 37



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 32/70 (45%), Positives = 41/70 (58%)
 Frame = +3

Query: 510 IITRDVTNSELREVVNKLIPDSIAKDIEKGLPMASTLWGDVCIRKGAKC*NEGPFRDLRS 689
           IIT +V+ ++L+++VNKL  DSIAKDIEK       L  DV IRK  K   +  F D+  
Sbjct: 124 IITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPL-HDVYIRK-VKVLKKPRF-DVSK 180

Query: 690 WLELSTAEGG 719
            LEL    GG
Sbjct: 181 LLELHGDGGG 190


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  142 bits (343), Expect = 6e-34
 Identities = 66/90 (73%), Positives = 74/90 (82%)
 Frame = +1

Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
           F + +LIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCI
Sbjct: 84  FRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCI 143

Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
           GFT KD  SQRKTCYAQ +QVR IR +M +
Sbjct: 144 GFTAKDQQSQRKTCYAQQSQVRKIRARMTD 173



 Score =  116 bits (279), Expect = 4e-26
 Identities = 53/67 (79%), Positives = 59/67 (88%)
 Frame = +2

Query: 53  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 232
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+ LKGRVFEVSLADLQ D D 
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDP 80

Query: 233 ERSFRKF 253
           ERSFRKF
Sbjct: 81  ERSFRKF 87



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 32/70 (45%), Positives = 41/70 (58%)
 Frame = +3

Query: 510 IITRDVTNSELREVVNKLIPDSIAKDIEKGLPMASTLWGDVCIRKGAKC*NEGPFRDLRS 689
           IIT +V+ ++L+++VNKL  DSIAKDIEK       L  DV IRK  K   +  F D+  
Sbjct: 174 IITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPL-HDVYIRK-VKVLKKPRF-DVSK 230

Query: 690 WLELSTAEGG 719
            LEL    GG
Sbjct: 231 LLELHGDGGG 240


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  137 bits (331), Expect = 2e-32
 Identities = 64/85 (75%), Positives = 70/85 (82%)
 Frame = +1

Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
           F + +LIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCI
Sbjct: 85  FRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCI 144

Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIR 495
           GFT KD  SQRKTCYA  +QVR IR
Sbjct: 145 GFTAKDQQSQRKTCYAHESQVRKIR 169



 Score =  106 bits (255), Expect = 3e-23
 Identities = 50/68 (73%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
 Frame = +2

Query: 53  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA-DLQADTD 229
           +VDPF+RKDWYDVKAP+MF  RQ+G TLVNRTQG +IAS+  KGRVFEVSL  DLQ D D
Sbjct: 21  VVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVPDLQKDID 80

Query: 230 AERSFRKF 253
            E SFRKF
Sbjct: 81  PEHSFRKF 88



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 32/70 (45%), Positives = 41/70 (58%)
 Frame = +3

Query: 510 IITRDVTNSELREVVNKLIPDSIAKDIEKGLPMASTLWGDVCIRKGAKC*NEGPFRDLRS 689
           IIT +V+ ++L+++VNKL  DSIAKDIEK       L  DV IRK  K   +  F D+  
Sbjct: 176 IITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPL-HDVYIRK-VKVLKKPRF-DVSK 232

Query: 690 WLELSTAEGG 719
            LEL    GG
Sbjct: 233 LLELHGDGGG 242


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  109 bits (261), Expect = 5e-24
 Identities = 50/68 (73%), Positives = 56/68 (82%)
 Frame = +1

Query: 307 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 486
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 487 AIRKKMCE 510
            IR +M +
Sbjct: 61  KIRARMTD 68



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 32/70 (45%), Positives = 41/70 (58%)
 Frame = +3

Query: 510 IITRDVTNSELREVVNKLIPDSIAKDIEKGLPMASTLWGDVCIRKGAKC*NEGPFRDLRS 689
           IIT +V+ ++L+++VNKL  DSIAKDIEK       L  DV IRK  K   +  F D+  
Sbjct: 69  IITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPL-HDVYIRK-VKVLKKPRF-DVSK 125

Query: 690 WLELSTAEGG 719
            LEL    GG
Sbjct: 126 LLELHGDGGG 135


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,401,647
Number of Sequences: 53049
Number of extensions: 795514
Number of successful extensions: 2278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2277
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3478915869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)