Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30804
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 105 3e-23
Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical pr... 30 2.1
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 30 2.1
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cycl... 30 2.1
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 8.3
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 8.3
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 105 bits (252), Expect = 3e-23
Identities = 49/66 (74%), Positives = 57/66 (86%)
Frame = +2
Query: 56 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 235
VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL ++E
Sbjct: 20 VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76
Query: 236 RSFRKF 253
FRKF
Sbjct: 77 ADFRKF 82
Score = 104 bits (250), Expect = 6e-23
Identities = 51/88 (57%), Positives = 62/88 (70%)
Frame = +1
Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
F + +LIAE VQG+NVL NFH M +T DKL +VKKW TLIEAN VKTTDGY LRVF I
Sbjct: 79 FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138
Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 504
FT K +KT Y + +++R IR +M
Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEM 166
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +3
Query: 492 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEK 596
+ E + I ++VT +L+EVV+KLIPDSI KDIEK
Sbjct: 163 RSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEK 197
>Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical
protein R01E6.1 protein.
Length = 1014
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 459 VLRPAHSGQSNQKENV*IITRDVTNSELR--EVVNKLIPDSIAKDIEKGLPM 608
++R + ++ V I T D+ +++++ ++N+++P SIAKD++ GL M
Sbjct: 767 MIRMSEKYADELEQMVAIRTADLADAQMQTMRLLNEMLPASIAKDLKNGLIM 818
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/77 (20%), Positives = 35/77 (45%)
Frame = -1
Query: 748 VSGLPPFALQPPSAVESSNQLRRSRNGPSFQHFAPFRMQTSPQRVDAMGRPFSMSLAMES 569
++ +PP PPS ++++QL+++ + +H + + V A MS+ +S
Sbjct: 562 INQVPPVVNTPPSPQQTASQLKKTPTSATKRHLPEIEQELKSESVPAPPPTKKMSIIADS 621
Query: 568 GINLFTTSLSSELVTSR 518
+ S+ E V +
Sbjct: 622 WDDHVGNSMEEEHVDEK 638
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/77 (20%), Positives = 35/77 (45%)
Frame = -1
Query: 748 VSGLPPFALQPPSAVESSNQLRRSRNGPSFQHFAPFRMQTSPQRVDAMGRPFSMSLAMES 569
++ +PP PPS ++++QL+++ + +H + + V A MS+ +S
Sbjct: 562 INQVPPVVNTPPSPQQTASQLKKTPTSATKRHLPEIEQELKSESVPAPPPTKKMSIIADS 621
Query: 568 GINLFTTSLSSELVTSR 518
+ S+ E V +
Sbjct: 622 WDDHVGNSMEEEHVDEK 638
>AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1017
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 459 VLRPAHSGQSNQKENV*IITRDVTNSELR--EVVNKLIPDSIAKDIEKGLPM 608
++R + ++ V I T D+ +++++ ++N+++P SIAKD++ GL M
Sbjct: 770 MIRMSEKYADELEQMVAIRTADLADAQMQTMRLLNEMLPASIAKDLKNGLIM 821
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 418 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*T 558
IGF ++ L + C + Q R ++ C S + S+ G W T
Sbjct: 868 IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTT 914
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 418 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*T 558
IGF ++ L + C + Q R ++ C S + S+ G W T
Sbjct: 868 IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTT 914
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 418 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*T 558
IGF ++ L + C + Q R ++ C S + S+ G W T
Sbjct: 868 IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTT 914
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,932,766
Number of Sequences: 27780
Number of extensions: 399118
Number of successful extensions: 1159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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