Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30804
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 736 PPFALQPPSAVESSN 692
           P F ++PPS VE SN
Sbjct: 30  PSFVMEPPSRVEFSN 44


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 736 PPFALQPPSAVESSN 692
           P F ++PPS VE SN
Sbjct: 30  PSFVMEPPSRVEFSN 44


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 64  WVDNLLLNTFFTALRQAFIF 5
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 64  WVDNLLLNTFFTALRQAFIF 5
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 261 D*LNLRKDLSASVSACRSARE 199
           D LNLR D+S+S S+  S+ E
Sbjct: 363 DILNLRTDISSSSSSISSSEE 383


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 91  QGSVYVQQEASRHH--ACQPYPGNENCFG 171
           Q S+Y+QQ+  +HH  +   +  N+  FG
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQERFG 122


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 681 DLETGLHFNTLHLFGCK 631
           D  +G H+N L   GCK
Sbjct: 192 DRASGYHYNALTCEGCK 208


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 581 QGHRERPAHGIYPLGRCLHPK 643
           +GH +R    +YPL R  +P+
Sbjct: 59  EGHDDREQPSVYPLLRFENPE 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,428
Number of Sequences: 438
Number of extensions: 4827
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)