Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30801
         (745 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1ZLD8 Cluster: Endonuclease/exonuclease/phosphatase fa...    35   2.4  
UniRef50_A1BH26 Cluster: Extracellular ligand-binding receptor p...    34   4.2  
UniRef50_A4RY92 Cluster: Predicted protein; n=1; Ostreococcus lu...    33   9.8  

>UniRef50_A1ZLD8 Cluster: Endonuclease/exonuclease/phosphatase
           family; n=1; Microscilla marina ATCC 23134|Rep:
           Endonuclease/exonuclease/phosphatase family -
           Microscilla marina ATCC 23134
          Length = 329

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 535 HVCLVVVYYVFTK-WLLTKSSFDAVNASNVFSNWILQNRTPP*TLRG 672
           ++C+ ++ +++ K WLLT S   +V  S +F  W  Q+   P  ++G
Sbjct: 60  YLCVAILSFIWQKKWLLTSSLLSSVLMSTLFIQWFWQSHPDPKNVKG 106


>UniRef50_A1BH26 Cluster: Extracellular ligand-binding receptor
           precursor; n=3; Bacteria|Rep: Extracellular
           ligand-binding receptor precursor - Chlorobium
           phaeobacteroides (strain DSM 266)
          Length = 410

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 149 LASQKNRAKLITRIRPDEPVVADNVILESNVVKIVNPRRGSGTRHRYGTSAIK 307
           ++S  N + +I  +     V+ D   +E N+VKI+ P  GS +  ++  + +K
Sbjct: 93  ISSMNNVSAVIGTVNTGVAVMGDKYYVEKNIVKIITPAAGSASMTQWNKTGVK 145


>UniRef50_A4RY92 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 168

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 97  QIQTNPETSRLRSKRRVFGVTEEQGQTHHQNKTRRTCSGR 216
           Q +   E  RLRS+ R   +TE+Q  T  QNK +R  S +
Sbjct: 103 QTKEQREKERLRSRNRRLQMTEKQRSTEAQNKLKRRASAK 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,870,860
Number of Sequences: 1657284
Number of extensions: 13364145
Number of successful extensions: 29824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29822
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)