Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30801
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    24   1.5  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    24   1.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   1.5  

>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 443 RRMRGWPSRLNTTLL-LAPMTVAVVFRHRQIRISCWYSNV 327
           +R R  PSR+NT L+ LA   + V F    + I  W S V
Sbjct: 79  KRRRKTPSRINTMLMHLAIADLLVTFLMMPLEIG-WASTV 117


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 443 RRMRGWPSRLNTTLL-LAPMTVAVVFRHRQIRISCWYSNV 327
           +R R  PSR+NT L+ LA   + V F    + I  W S V
Sbjct: 79  KRRRKTPSRINTMLMHLAIADLLVTFLMMPLEIG-WASTV 117


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 100 IQTNPETSRLRSKRRVFGVTEEQGQTHHQNKTRR 201
           I++  E   LR K  ++GV EE  +T H N+  R
Sbjct: 329 IKSVQEVEMLREK--IYGVLEEYTRTTHPNEPGR 360


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,717
Number of Sequences: 336
Number of extensions: 3276
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)