Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30801
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    25   8.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.6  

>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 77  DREIDSARYKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKI 250
           D  ++   ++ +PKH     +E  E L   K R   + RI+  +PV     +    VVKI
Sbjct: 134 DLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVVKI 193

Query: 251 VNPRRGSGTRHRY 289
           V     SG  + Y
Sbjct: 194 VRRSETSGRYNSY 206


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 307 GADTTWKTLEYQQDIRIWRCLNTTATVIGASSRVVLSRDGQP 432
           G +TT  T  Y +        + T T+IG ++ ++    G P
Sbjct: 851 GTETTEGTATYTEPTTFTSTFSFTTTIIGGTTTIIPVNPGNP 892


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,489
Number of Sequences: 5004
Number of extensions: 55976
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)