Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30801
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0038 - 22312479-22313282                                         30   1.7  
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728...    30   2.2  
06_01_0144 + 1089090-1091390                                           29   5.2  
05_01_0363 - 2846133-2846441,2846820-2846885,2847184-2847276,284...    29   5.2  
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931...    28   6.8  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    28   6.8  

>04_04_0038 - 22312479-22313282
          Length = 267

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +1

Query: 187 NKTRRTCSGR*CYFGIERGQDSEPSKRKWNATSVRH*CD*GADTTWKTLEYQQD----IR 354
           N+ RRTC    C FG    +     +    +++ R   D  +   WK LEY++D    I 
Sbjct: 144 NRKRRTCMHEGCSFGGSYRKLRNHVRSNHPSSNPRE-IDSASLAEWKELEYEKDRQDAIS 202

Query: 355 IWRCLNTTATVIG 393
           I   LN  +T++G
Sbjct: 203 IITALNPGSTIMG 215


>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
            7280242-7280547,7280643-7280857,7281395-7281689,
            7281906-7281983,7282070-7282705,7283016-7283102,
            7283945-7284265,7285503-7287599
          Length = 1483

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -2

Query: 294  VPYRCRVPLPLRGFTILTTFDSKITLSATTGSSGLILVMSL 172
            V YR   PL L+G TI      KI +   TGS    LV +L
Sbjct: 1244 VRYRSNTPLILKGITISINSGEKIGVVGRTGSGKSTLVQAL 1284


>06_01_0144 + 1089090-1091390
          Length = 766

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 77  DREIDSARYKQIPKHHDYVLNEE---YLASQKNRAKLITRIRPDEPVVADNVILESNVV 244
           DRE     YK + K     L      YL+S+++R + I  +R D    AD  +LE   V
Sbjct: 626 DREGTERIYKDLKKGIKAALGGARGYYLSSERSRHETIRALRVDASAAADMTVLERGAV 684


>05_01_0363 -
           2846133-2846441,2846820-2846885,2847184-2847276,
           2847487-2847600,2847762-2847849,2848116-2848199,
           2848312-2848411,2848886-2848949,2849339-2849419,
           2849944-2850000,2850188-2850387,2850668-2850971,
           2851518-2851707,2851922-2852032,2852111-2852192,
           2852443-2853046
          Length = 848

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -1

Query: 340 GTLTFSKLYPRLNRT-SAVPMSRSTSSSRVHYL---DHVRFQ-NNIICHYRFVGSYSGDE 176
           G L    LY  L R  + +P  RS   ++V Y    D   +  N  IC  + +  Y G+E
Sbjct: 559 GKLADCTLYCNLLRAPTLLPNKRSKEQTKVAYRMLRDCFHYALNTSICRAKILVKYFGEE 618

Query: 175 FGP 167
           FGP
Sbjct: 619 FGP 621


>06_03_0473 + 21190878-21191188,21191269-21192355,21192972-21193194,
            21193286-21193356,21193385-21193441,21193442-21194056,
            21194168-21194237,21194470-21194745,21194916-21195130,
            21195224-21195529,21195750-21195813,21195902-21196141,
            21196306-21196415
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 294  VPYRCRVPLPLRGFTILTTFDSKITLSATTGSSGLILVMSL 172
            V YR  +PL L+G T      +KI +   TGS    L+ SL
Sbjct: 976  VRYRPNMPLVLKGITCTFPAGNKIGVVGRTGSGKSTLISSL 1016


>04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,
            7265088-7265393,7265652-7265866,7266195-7266489,
            7266596-7266655,7267091-7267717,7268510-7268596,
            7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 294  VPYRCRVPLPLRGFTILTTFDSKITLSATTGSSGLILVMSL 172
            V YR   PL L+G T+  +   KI +   TGS    L+ +L
Sbjct: 1333 VRYRPNTPLILKGITVSISGGEKIGVVGRTGSGKSTLIQAL 1373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,350,906
Number of Sequences: 37544
Number of extensions: 376740
Number of successful extensions: 857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)