Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30801
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4327| Best HMM Match : Phosphodiest (HMM E-Value=0)                 30   2.3  
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    29   3.0  
SB_43528| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)                    28   9.2  
SB_43289| Best HMM Match : DUF196 (HMM E-Value=5.5)                    28   9.2  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_4327| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 488

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 86  IDSARYKQIPKHHDYVLNEEYLASQKNRAKLITRIRP 196
           +D  RY  + KH D V N  +LASQ  + + +  + P
Sbjct: 29  LDGFRYDYMEKHKDSVPNLRHLASQGTQVEYVKNVYP 65


>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +2

Query: 59   GDRIGYDREIDSARYKQIPKHHDYVLNEEYLASQKNRAKLITR-----IRPDEPVVADNV 223
            G+ +GY+ +  S R +  P  + Y +  E +  +++ A L+TR     I  D  V+AD +
Sbjct: 1270 GEYVGYEMDDPSLRDEDGPPTYIYAIVVEEITGEESTALLLTRKYKINIGDDREVIADGI 1329

Query: 224  IL 229
             L
Sbjct: 1330 DL 1331


>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 241 HVRFQNNIICHYRFVGSYSGDEFGPVLL 158
           HV+  N +IC YR++     DE   +LL
Sbjct: 93  HVQMHNKLICRYRYLQKSYEDEMNKILL 120


>SB_43528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 307 LNRTSAVPMSRSTSSSRVHYLDHVRFQNNIICHYRFVG 194
           + R +++PM ++TS++R H       QN  IC  R+ G
Sbjct: 106 VQRIASLPMVQTTSTNRFHSHARKTCQNVCICATRYAG 143


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +1

Query: 547 VVVYYVFTKWLLTKSSFDAVNASNVFSNWILQN 645
           +V+Y  F++WL+ K   + ++  + F  ++ +N
Sbjct: 269 LVIYDEFSRWLVAKQDMNGISIKDAFKQFVKEN 301


>SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 77  DREIDSARYKQIPKHHDYVLNEE 145
           DR +D ++YK  P HH Y L  E
Sbjct: 19  DRFVDLSKYKNSPTHHHYSLYTE 41


>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
          Length = 940

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 668 GAKANLLLFNKN*ILGVIKKCFLGI 742
           G+K  L+ FN+  ++G  KKC+LG+
Sbjct: 683 GSKQPLVDFNRGILVGDYKKCYLGL 707


>SB_43289| Best HMM Match : DUF196 (HMM E-Value=5.5)
          Length = 240

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +2

Query: 59  GDRIGYDREIDSARYKQIPKHHDYVLNEEYLASQKNRAKLITR-----IRPDEPVVADNV 223
           G+ +GY+ +  S R +  P  + Y +  E +  +++ A  +TR     I  D  V+AD +
Sbjct: 96  GEYVGYEMDDPSLRDEDGPPTYIYAIVVEEIPGEESTALFLTRKYKINIGDDREVIADGI 155

Query: 224 IL 229
            L
Sbjct: 156 DL 157


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +2

Query: 59   GDRIGYDREIDSARYKQIPKHHDYVLNEEYLASQKNRAKLITR-----IRPDEPVVADNV 223
            G+ +GY+ +  S R +  P  + Y +  E +  +++ A  +TR     I  D  V+AD +
Sbjct: 3924 GEYVGYEMDDPSLRDEDGPPTYIYAIVVEEIPGEESTALFLTRKYKINIGDDREVIADGI 3983

Query: 224  IL 229
             L
Sbjct: 3984 DL 3985


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,242,327
Number of Sequences: 59808
Number of extensions: 435799
Number of successful extensions: 982
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)