Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30801
         (745 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J04965-1|AAA62401.1|  210|Homo sapiens RNA polymerase II 23kD su...    30   7.6  
D38251-1|BAA07406.1|  210|Homo sapiens RPB5 protein.                   30   7.6  
BC004441-1|AAH04441.1|  210|Homo sapiens polymerase (RNA) II (DN...    30   7.6  
AC004151-2|AAC03238.1|  210|Homo sapiens RPB5_Human protein.           30   7.6  
AB067349-1|BAC02384.1|  131|Homo sapiens immunoglobulin heavy ch...    30   7.6  

>J04965-1|AAA62401.1|  210|Homo sapiens RNA polymerase II 23kD
           subunit protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 86  IDSARYKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVNP 259
           I+   ++ +P+H      E  E LA  K R   + RI+  +PV     I    VVKI+ P
Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 196

Query: 260 RRGSG 274
              +G
Sbjct: 197 SETAG 201


>D38251-1|BAA07406.1|  210|Homo sapiens RPB5 protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 86  IDSARYKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVNP 259
           I+   ++ +P+H      E  E LA  K R   + RI+  +PV     I    VVKI+ P
Sbjct: 137 INITEHELVPEHVVMTKEEVSELLARYKLRENQLPRIQAGDPVARYFGIRRGQVVKIIRP 196

Query: 260 RRGSG 274
              +G
Sbjct: 197 SETAG 201


>BC004441-1|AAH04441.1|  210|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide E, 25kDa protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 86  IDSARYKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVNP 259
           I+   ++ +P+H      E  E LA  K R   + RI+  +PV     I    VVKI+ P
Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 196

Query: 260 RRGSG 274
              +G
Sbjct: 197 SETAG 201


>AC004151-2|AAC03238.1|  210|Homo sapiens RPB5_Human protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 86  IDSARYKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVNP 259
           I+   ++ +P+H      E  E LA  K R   + RI+  +PV     I    VVKI+ P
Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 196

Query: 260 RRGSG 274
              +G
Sbjct: 197 SETAG 201


>AB067349-1|BAC02384.1|  131|Homo sapiens immunoglobulin heavy chain
           VHDJ region protein.
          Length = 131

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 97  QIQTNPETSRLRSKRRVFGVTEEQGQTHHQNKTRRTCSGR*CYFGIERGQD 249
           +I  NP+T + +    +  VT E    ++  + R  CSG  CY G++ G D
Sbjct: 70  RIIINPDTPKNQISLNLNSVTPEDTAVYYCARVRGYCSGTSCY-GLDYGMD 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,179,211
Number of Sequences: 237096
Number of extensions: 2024086
Number of successful extensions: 2840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2840
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)