BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30801 (745 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value J04965-1|AAA62401.1| 210|Homo sapiens RNA polymerase II 23kD su... 30 7.6 D38251-1|BAA07406.1| 210|Homo sapiens RPB5 protein. 30 7.6 BC004441-1|AAH04441.1| 210|Homo sapiens polymerase (RNA) II (DN... 30 7.6 AC004151-2|AAC03238.1| 210|Homo sapiens RPB5_Human protein. 30 7.6 AB067349-1|BAC02384.1| 131|Homo sapiens immunoglobulin heavy ch... 30 7.6 >J04965-1|AAA62401.1| 210|Homo sapiens RNA polymerase II 23kD subunit protein. Length = 210 Score = 30.3 bits (65), Expect = 7.6 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +2 Query: 86 IDSARYKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVNP 259 I+ ++ +P+H E E LA K R + RI+ +PV I VVKI+ P Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 196 Query: 260 RRGSG 274 +G Sbjct: 197 SETAG 201 >D38251-1|BAA07406.1| 210|Homo sapiens RPB5 protein. Length = 210 Score = 30.3 bits (65), Expect = 7.6 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +2 Query: 86 IDSARYKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVNP 259 I+ ++ +P+H E E LA K R + RI+ +PV I VVKI+ P Sbjct: 137 INITEHELVPEHVVMTKEEVSELLARYKLRENQLPRIQAGDPVARYFGIRRGQVVKIIRP 196 Query: 260 RRGSG 274 +G Sbjct: 197 SETAG 201 >BC004441-1|AAH04441.1| 210|Homo sapiens polymerase (RNA) II (DNA directed) polypeptide E, 25kDa protein. Length = 210 Score = 30.3 bits (65), Expect = 7.6 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +2 Query: 86 IDSARYKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVNP 259 I+ ++ +P+H E E LA K R + RI+ +PV I VVKI+ P Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 196 Query: 260 RRGSG 274 +G Sbjct: 197 SETAG 201 >AC004151-2|AAC03238.1| 210|Homo sapiens RPB5_Human protein. Length = 210 Score = 30.3 bits (65), Expect = 7.6 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +2 Query: 86 IDSARYKQIPKHHDYVLNE--EYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIVNP 259 I+ ++ +P+H E E LA K R + RI+ +PV I VVKI+ P Sbjct: 137 INITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRP 196 Query: 260 RRGSG 274 +G Sbjct: 197 SETAG 201 >AB067349-1|BAC02384.1| 131|Homo sapiens immunoglobulin heavy chain VHDJ region protein. Length = 131 Score = 30.3 bits (65), Expect = 7.6 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +1 Query: 97 QIQTNPETSRLRSKRRVFGVTEEQGQTHHQNKTRRTCSGR*CYFGIERGQD 249 +I NP+T + + + VT E ++ + R CSG CY G++ G D Sbjct: 70 RIIINPDTPKNQISLNLNSVTPEDTAVYYCARVRGYCSGTSCY-GLDYGMD 119 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 97,179,211 Number of Sequences: 237096 Number of extensions: 2024086 Number of successful extensions: 2840 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2840 length of database: 76,859,062 effective HSP length: 88 effective length of database: 55,994,614 effective search space used: 8903143626 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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