Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30800
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 138 6e-34
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 138 6e-34
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 138 6e-34
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 2e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.30
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 2.1
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 27 2.8
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 26 6.5
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 6.5
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 25 8.6
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 25 8.6
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 25 8.6
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 138 bits (335), Expect = 6e-34
Identities = 61/84 (72%), Positives = 74/84 (88%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VG
Sbjct: 107 PEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVG 166
Query: 435 IVAGGGRIDKPILKAGRAYHKYKV 506
IVAGGGRIDKP+LKAGRA+HKY+V
Sbjct: 167 IVAGGGRIDKPLLKAGRAFHKYRV 190
Score = 93.1 bits (221), Expect = 4e-20
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG
Sbjct: 22 RKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEG 80
Score = 72.1 bits (169), Expect = 8e-14
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +2
Query: 506 QRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKKR 616
+RNCWP RGVAMNPV+HPHGGGNHQH+G ++TV ++
Sbjct: 191 KRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQ 227
Score = 46.0 bits (104), Expect = 6e-06
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVG 249
+YTGQFVYCGK + L VGNV+PVG
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVG 104
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 138 bits (335), Expect = 6e-34
Identities = 61/84 (72%), Positives = 74/84 (88%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VG
Sbjct: 107 PEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVG 166
Query: 435 IVAGGGRIDKPILKAGRAYHKYKV 506
IVAGGGRIDKP+LKAGRA+HKY+V
Sbjct: 167 IVAGGGRIDKPLLKAGRAFHKYRV 190
Score = 93.1 bits (221), Expect = 4e-20
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG
Sbjct: 22 RKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEG 80
Score = 72.1 bits (169), Expect = 8e-14
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +2
Query: 506 QRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKKR 616
+RNCWP RGVAMNPV+HPHGGGNHQH+G ++TV ++
Sbjct: 191 KRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQ 227
Score = 46.0 bits (104), Expect = 6e-06
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVG 249
+YTGQFVYCGK + L VGNV+PVG
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVG 104
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 138 bits (335), Expect = 6e-34
Identities = 61/84 (72%), Positives = 74/84 (88%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VG
Sbjct: 107 PEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVG 166
Query: 435 IVAGGGRIDKPILKAGRAYHKYKV 506
IVAGGGRIDKP+LKAGRA+HKY+V
Sbjct: 167 IVAGGGRIDKPLLKAGRAFHKYRV 190
Score = 93.1 bits (221), Expect = 4e-20
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG
Sbjct: 22 RKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEG 80
Score = 72.1 bits (169), Expect = 8e-14
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +2
Query: 506 QRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKKR 616
+RNCWP RGVAMNPV+HPHGGGNHQH+G ++TV ++
Sbjct: 191 KRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQ 227
Score = 46.0 bits (104), Expect = 6e-06
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVG 249
+YTGQFVYCGK + L VGNV+PVG
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVG 104
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2
Query: 521 PYVRGVAMNPVEHPHGGGNHQHIG 592
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
Score = 33.5 bits (73), Expect = 0.033
Identities = 20/78 (25%), Positives = 41/78 (52%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
P GT++ + + +L R++G+ A +I D K V+L SG ++ + ++ +G
Sbjct: 174 PIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEERKILDTSFATIG 231
Query: 435 IVAGGGRIDKPILKAGRA 488
+V+ + + KAGR+
Sbjct: 232 VVSNIYWQHRQLGKAGRS 249
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 445 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 275
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 252 SSNRHHISNFKS*XLSTINKLACVEPSGAMKSSFLVLN--LYGSRKCTTAKG 103
SS HH+ +ST L ++ K+ F+VLN +Y S K + +G
Sbjct: 237 SSESHHLLELLGLRISTFMSLGDIDKELISKTDFVVLNNAVYDSEKISFPEG 288
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 554 LQGSWQHHVHMASSYVDLVLV 492
++GS +VHM+S+YVD +L+
Sbjct: 62 IRGSVVRYVHMSSAYVDTILL 82
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 553 YRVHGNTT-YIWPAVTLTLYLWYALPAFKI 467
Y HG+ +IW + + + ALP+FK+
Sbjct: 70 YTTHGSIVEFIWTLIPALILILVALPSFKL 99
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -2
Query: 604 SGSLTYMLMVTTTVRMLYRVHGNTTYIWPAVTLTLYLWYALPAFKIGLSIRP 449
SG LT + ++ TT ++L +GN Y++ V + L + + A +G+S+ P
Sbjct: 299 SGQLTLLRLICTT-KIL---NGNPIYVYSFVPHKIRLTHLVDAPLLGMSVCP 346
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 521 PYVRGVAMNPVEHPHGGGNHQHIGKASTVKKRG 619
PY R V + E PH G + + A T++ G
Sbjct: 55 PYFREVVLMSFECPHCGFKNAQVQHAETIQPEG 87
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 243 CWSYPEGTIVCNLEEKMGDRGRLARASGNFATVI 344
C +Y E T +L+EK+ + RL +GN A ++
Sbjct: 110 CLTYLEETPDLSLDEKITEFSRLKLTTGNTALIL 143
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 400 FLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTMVPSG*LQQASHF 230
F P G+FT R + + P A +P P F + ++ PS L A HF
Sbjct: 79 FPRPSGTFTASRRIP-VSSLLSEPAPHGLAGQPTHPTFLYYIQSVAPSLCLWDACHF 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,856
Number of Sequences: 5004
Number of extensions: 73868
Number of successful extensions: 208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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