Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30800
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 129 3e-30
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.24
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.42
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.9
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 5.2
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 5.2
06_01_0869 - 6616667-6616945,6618006-6619241 28 6.8
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 9.0
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 129 bits (311), Expect = 3e-30
Identities = 57/86 (66%), Positives = 70/86 (81%)
Frame = +3
Query: 249 SYPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGM 428
S PEG +VCN+E +GDRG ARASG++A VI HNPD +R+KLPSGAKK++PSS R M
Sbjct: 106 SVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAM 165
Query: 429 VGIVAGGGRIDKPILKAGRAYHKYKV 506
+G VAGGGR +KP+LKAG AYHKY+V
Sbjct: 166 IGQVAGGGRTEKPMLKAGNAYHKYRV 191
Score = 92.3 bits (219), Expect = 4e-19
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR P+++K +KELF+A EG
Sbjct: 23 RKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEG 81
Score = 78.6 bits (185), Expect = 5e-15
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = +2
Query: 506 QRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+RNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV++
Sbjct: 192 KRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRR 227
Score = 44.8 bits (101), Expect = 7e-05
Identities = 15/26 (57%), Positives = 23/26 (88%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAI 255
+YTGQFVYCG+ +TL +GNV+P+ ++
Sbjct: 82 MYTGQFVYCGRRATLSIGNVLPIRSV 107
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 443 WRWTY*QTYFESWKGIPQVQG 505
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -2
Query: 460 SIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 281
++ PPP +P +P R+ P G +G P A R+P +P+F S
Sbjct: 12 ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70
Query: 280 RL 275
R+
Sbjct: 71 RV 72
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.9
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2
Query: 320 LWKLRHCDWT 349
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 5.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 443 WRWTY*QTYFESWKGIPQVQG 505
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -3
Query: 351 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 262
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>06_01_0869 - 6616667-6616945,6618006-6619241
Length = 504
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -2
Query: 586 MLMVTTTVRMLYRVHGNTT-YIWPAVTLTLYLWYALPAFKIGLSIRPPPATIPTMPLLLD 410
+L V+ V R + + +++ VT +YL PAF++ + RPPP + L
Sbjct: 226 VLAVSVVVASAARAAADPSRHVFHVVTAPMYL----PAFRVWFARRPPPLGVHVQLLAYS 281
Query: 409 GRTFLAPDGSFTLVRLASG 353
FL S L ++ +G
Sbjct: 282 DFPFLNETSSPVLRQIEAG 300
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 351 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 470
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,261,188
Number of Sequences: 37544
Number of extensions: 551665
Number of successful extensions: 1583
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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