Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30800
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 9e-36
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 96 3e-20
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 40 0.002
SB_54819| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 31 0.99
SB_52855| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0) 28 9.2
SB_26845| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_11630| Best HMM Match : GIY-YIG (HMM E-Value=9.1) 28 9.2
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 147 bits (356), Expect = 9e-36
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VG
Sbjct: 108 PEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVG 167
Query: 435 IVAGGGRIDKPILKAGRAYHKYK 503
IVAGGGRIDKP+LKAGRAYHKYK
Sbjct: 168 IVAGGGRIDKPMLKAGRAYHKYK 190
Score = 105 bits (253), Expect = 3e-23
Identities = 48/59 (81%), Positives = 52/59 (88%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG
Sbjct: 23 RKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 81
Score = 77.0 bits (181), Expect = 2e-14
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = +2
Query: 500 QGQRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+ +RNCWP VRGVAMNPVEHPHGGGNHQHIG STV++
Sbjct: 190 KAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRR 227
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVG 249
+YTGQF+YCGK + L++GN +PVG
Sbjct: 82 MYTGQFIYCGKKAALQIGNCLPVG 105
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 95.9 bits (228), Expect = 3e-20
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGM 428
PEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +
Sbjct: 66 PEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRAL 123
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/39 (82%), Positives = 36/39 (92%)
Frame = +2
Query: 62 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 39
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVG 249
+YTGQF+YCGK + L++GN +PVG
Sbjct: 40 MYTGQFIYCGKKAALQIGNCLPVG 63
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 40.3 bits (90), Expect = 0.002
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
P GT+V N+E G +LARA+G A +I + V+LPS +K + S VG
Sbjct: 124 PIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVEKEVSSKCLASVG 181
Query: 435 IVAGGGRIDKPILKAGR 485
V+ R ++ I KAGR
Sbjct: 182 RVSNIERKNRVIGKAGR 198
>SB_54819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = -1
Query: 575 YHHREDAL--QGSWQHHVHMA-----SSYVDLVLVVCPSSFQNRFVNTSTSSNNTDH 426
YHHR + S HH H+ SSY ++V+ PSS+ +R + S ++ H
Sbjct: 103 YHHRHMTIVISPSSYHHRHITIAISPSSYRHTIIVISPSSYHHRHITIVRSPSSYHH 159
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 448 PPATIPTMPLLLDGRTFLAPDGSFT 374
P AT + L+LD TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159
>SB_52855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Frame = -1
Query: 575 YHHREDAL--QGSWQHHVHMA-----SSYVDLVLVVCPSSFQNRFVNTSTSSNNTDH 426
YHHR + S HH H+ SSY ++V+ PSS+ +R + S + H
Sbjct: 103 YHHRHMTIVISPSSYHHRHITIAISPSSYRHTIIVILPSSYHHRHITIVISPPSYHH 159
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 377 YSCTLSIRIVSNHSGEVSRGTCQTT-SITHFLFKIAHNGTLRIAPT 243
+S + IR V + E S T +ITH L+ +AHNG + PT
Sbjct: 1041 FSLQVDIRSVIAFAPEASLPYLSGTHTITHNLYNLAHNGKNNLLPT 1086
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 309 LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 437
+AR +G+F T + D RTR P KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513
>SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0)
Length = 652
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 541 GNTT--YIWPAVTLTLYLWYALPAFKIGLSI 455
GNTT Y W AV + +++ LPA GLS+
Sbjct: 544 GNTTARYRWFAVAYLILMFFLLPAAVFGLSL 574
>SB_26845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 100 CTFGCCTLPRSIQVQDKEGALHCSRRLYTGQFVYCGKXSTLEVGNVMPVGAILRV 264
CT GC L R+ +V G+++ R ++ +F Y GK + +P G +L++
Sbjct: 55 CTCGCEDLARAKEVPAVGGSVYKLVRKFSTRFPYRGKLVLAKF--FLPCGGVLKL 107
>SB_11630| Best HMM Match : GIY-YIG (HMM E-Value=9.1)
Length = 177
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 672 SFRVLASSNRPNFATSRCPLFLTVEALPIC 583
S+R+L+S + N T RC LFL + IC
Sbjct: 120 SWRILSSHSAYNSTTERCNLFLKEKLTIIC 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,121,364
Number of Sequences: 59808
Number of extensions: 604357
Number of successful extensions: 1666
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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