Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30800
(743 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 prot... 151 3e-36
CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. 151 3e-36
BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 pr... 151 3e-36
BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 pr... 151 3e-36
BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 pr... 151 3e-36
BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 pr... 151 3e-36
BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 pr... 151 3e-36
BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein. 151 3e-36
AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 pr... 151 3e-36
AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8 pr... 105 1e-22
BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor,... 31 4.4
AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor ... 31 4.4
>Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 151 bits (365), Expect = 3e-36
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG
Sbjct: 108 PEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVG 167
Query: 435 IVAGGGRIDKPILKAGRAYHKYK 503
+VAGGGRIDKPILKAGRAYHKYK
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYK 190
Score = 105 bits (253), Expect = 1e-22
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 23 RKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 75.4 bits (177), Expect = 2e-13
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +2
Query: 500 QGQRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+ +RNCWP VRGVAMNPVEHP GGGNHQHIGK ST+++
Sbjct: 190 KAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAILRVPLCAILKRK 291
++TGQFVYCGK + L +GNV+PVG + + L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119
>CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein.
Length = 257
Score = 151 bits (365), Expect = 3e-36
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG
Sbjct: 108 PEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVG 167
Query: 435 IVAGGGRIDKPILKAGRAYHKYK 503
+VAGGGRIDKPILKAGRAYHKYK
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYK 190
Score = 105 bits (253), Expect = 1e-22
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 23 RKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 75.4 bits (177), Expect = 2e-13
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +2
Query: 500 QGQRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+ +RNCWP VRGVAMNPVEHP GGGNHQHIGK ST+++
Sbjct: 190 KAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAILRVPLCAILKRK 291
++TGQFVYCGK + L +GNV+PVG + + L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119
>BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 151 bits (365), Expect = 3e-36
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG
Sbjct: 108 PEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVG 167
Query: 435 IVAGGGRIDKPILKAGRAYHKYK 503
+VAGGGRIDKPILKAGRAYHKYK
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYK 190
Score = 105 bits (253), Expect = 1e-22
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 23 RKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 75.4 bits (177), Expect = 2e-13
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +2
Query: 500 QGQRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+ +RNCWP VRGVAMNPVEHP GGGNHQHIGK ST+++
Sbjct: 190 KAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Score = 45.6 bits (103), Expect = 2e-04
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAILRVPLCAILKRK 291
++TGQFVYCGK + L VGNV+PVG + + L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEK 119
>BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 151 bits (365), Expect = 3e-36
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG
Sbjct: 108 PEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVG 167
Query: 435 IVAGGGRIDKPILKAGRAYHKYK 503
+VAGGGRIDKPILKAGRAYHKYK
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYK 190
Score = 105 bits (253), Expect = 1e-22
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 23 RKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 75.4 bits (177), Expect = 2e-13
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +2
Query: 500 QGQRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+ +RNCWP VRGVAMNPVEHP GGGNHQHIGK ST+++
Sbjct: 190 KAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAILRVPLCAILKRK 291
++TGQFVYCGK + L +GNV+PVG + + L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119
>BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 151 bits (365), Expect = 3e-36
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG
Sbjct: 108 PEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVG 167
Query: 435 IVAGGGRIDKPILKAGRAYHKYK 503
+VAGGGRIDKPILKAGRAYHKYK
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYK 190
Score = 105 bits (253), Expect = 1e-22
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 23 RKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 75.4 bits (177), Expect = 2e-13
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +2
Query: 500 QGQRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+ +RNCWP VRGVAMNPVEHP GGGNHQHIGK ST+++
Sbjct: 190 KAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Score = 45.6 bits (103), Expect = 2e-04
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAILRVPLCAILKRK 291
++TGQFVYCGK + L VGNV+PVG + + L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEK 119
>BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 151 bits (365), Expect = 3e-36
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG
Sbjct: 108 PEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVG 167
Query: 435 IVAGGGRIDKPILKAGRAYHKYK 503
+VAGGGRIDKPILKAGRAYHKYK
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYK 190
Score = 105 bits (253), Expect = 1e-22
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 23 RKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 75.4 bits (177), Expect = 2e-13
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +2
Query: 500 QGQRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+ +RNCWP VRGVAMNPVEHP GGGNHQHIGK ST+++
Sbjct: 190 KAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Score = 45.6 bits (103), Expect = 2e-04
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAILRVPLCAILKRK 291
++TGQFVYCGK + L VGNV+PVG + + L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEK 119
>BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 151 bits (365), Expect = 3e-36
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG
Sbjct: 108 PEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVG 167
Query: 435 IVAGGGRIDKPILKAGRAYHKYK 503
+VAGGGRIDKPILKAGRAYHKYK
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYK 190
Score = 105 bits (253), Expect = 1e-22
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 23 RKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 75.4 bits (177), Expect = 2e-13
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +2
Query: 500 QGQRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+ +RNCWP VRGVAMNPVEHP GGGNHQHIGK ST+++
Sbjct: 190 KAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAILRVPLCAILKRK 291
++TGQFVYCGK + L +GNV+PVG + + L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119
>BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein.
Length = 211
Score = 151 bits (365), Expect = 3e-36
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG
Sbjct: 62 PEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVG 121
Query: 435 IVAGGGRIDKPILKAGRAYHKYK 503
+VAGGGRIDKPILKAGRAYHKYK
Sbjct: 122 VVAGGGRIDKPILKAGRAYHKYK 144
Score = 75.4 bits (177), Expect = 2e-13
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +2
Query: 500 QGQRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+ +RNCWP VRGVAMNPVEHP GGGNHQHIGK ST+++
Sbjct: 144 KAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 181
Score = 64.5 bits (150), Expect = 4e-10
Identities = 29/35 (82%), Positives = 30/35 (85%)
Frame = +2
Query: 74 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
DIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 1 DIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 35
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAILRVPLCAILKRK 291
++TGQFVYCGK + L +GNV+PVG + + L+ K
Sbjct: 36 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 73
>AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8
protein.
Length = 257
Score = 151 bits (365), Expect = 3e-36
Identities = 68/83 (81%), Positives = 77/83 (92%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVG 434
PEGTIVC LEEK GDRG+LARASGN+ATVI HNP+ K+TRVKLPSG+KKV+ S+NR +VG
Sbjct: 108 PEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVG 167
Query: 435 IVAGGGRIDKPILKAGRAYHKYK 503
+VAGGGRIDKPILKAGRAYHKYK
Sbjct: 168 VVAGGGRIDKPILKAGRAYHKYK 190
Score = 105 bits (253), Expect = 1e-22
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 23 RKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 81
Score = 75.4 bits (177), Expect = 2e-13
Identities = 29/38 (76%), Positives = 34/38 (89%)
Frame = +2
Query: 500 QGQRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKK 613
+ +RNCWP VRGVAMNPVEHP GGGNHQHIGK ST+++
Sbjct: 190 KAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAILRVPLCAILKRK 291
++TGQFVYCGK + L +GNV+PVG + + L+ K
Sbjct: 82 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 119
>AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8
protein.
Length = 130
Score = 105 bits (253), Expect = 1e-22
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 178
RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FRDPY+FK R ELFIA EG
Sbjct: 19 RKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEG 77
Score = 52.0 bits (119), Expect = 2e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +3
Query: 255 PEGTIVCNLEEKMGDRGRLARASGNFA 335
PEGTIVC LEEK GDRG+LARASGN+A
Sbjct: 104 PEGTIVCCLEEKPGDRGKLARASGNYA 130
Score = 45.2 bits (102), Expect = 3e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 178 LYTGQFVYCGKXSTLEVGNVMPVGAILRVPLCAILKRK 291
++TGQFVYCGK + L +GNV+PVG + + L+ K
Sbjct: 78 IHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEK 115
>BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor,
alpha protein.
Length = 457
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 183 VEPSGAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 58
VE G + FLV++ Y +R C KG P PG + L TPL
Sbjct: 5 VEVGGPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48
>AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor
alpha 2 isoform protein.
Length = 54
Score = 31.1 bits (67), Expect = 4.4
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 183 VEPSGAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 58
VE G + FLV++ Y +R C KG P PG + L TPL
Sbjct: 5 VEVGGPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,615,552
Number of Sequences: 237096
Number of extensions: 3136398
Number of successful extensions: 7090
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7090
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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