Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30800
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.57 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   5.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.2  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 121 LPRSIQVQDKEGALHCSRRLYTGQFVYCGK 210
           L +S++  DKE  L     LY  +F Y GK
Sbjct: 508 LNKSLKYSDKERDLSLRMILYFSEFAYLGK 537


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 631 DQQMSPLLDSGSLTYMLM-VTTTVRMLYRVHGNTTYIWPAVTLTLYLWY 488
           D+Q++ ++ S  L   +      +R + +        WPA T  LYL Y
Sbjct: 318 DKQIASVVKSSELAVRIQRQENNIRPMVKQIDTVAAEWPATTNYLYLTY 366


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 342 IGHNPDAKRTRVKLPSGAKKVL 407
           IG+  + K+TR  LP+G +KVL
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVL 77


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 613 LLDSGSLTYMLMVTTTVRMLYRVH 542
           L   GS+TY +  TTT+  +  +H
Sbjct: 143 LSGDGSVTYGMRFTTTLACMMDLH 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,549
Number of Sequences: 438
Number of extensions: 5656
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)