Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30799
         (832 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    29   0.060
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    26   0.32 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.56 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 28.7 bits (61), Expect = 0.060
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +3

Query: 354  PPSPECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTKPTKTVES 533
            P  P+   G +  + S   +   WTT P+T   W      P   + TT+R T  T+   +
Sbjct: 1012 PAPPQVTTGVDTGASSTEHMHPDWTTKPSTW--WSSTTTSPW-WTTTTTRRTTTTRPTTT 1068

Query: 534  STRAR 548
            ST  R
Sbjct: 1069 STTTR 1073


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 115 STWMISSVSTPTKTKLNLFLTSGRSLTPRTIPFGM 219
           S W I    +P   +   FL +GRS T + +PFG+
Sbjct: 399 SYWQIPL--SPESRQYTAFLYNGRSYTYQVLPFGL 431


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 656  RVGWLGNFSGNCPLQFYWIFY*KPSR*LNWFFQFARVL 769
            ++ W+  F GN P+  Y I Y K S+ ++W     RVL
Sbjct: 913  QLSWVAPFDGNSPITRYMIEY-KQSK-VSWEGNTERVL 948


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 459 LRARRPRNLSRTTSRGTKPTKTVESSTRARYFK*MPTNV--PANVYTFHTNNYKKLLPKK 632
           L+ ++ ++ SRTT+  TK   +  S   A      PT +  P+   +  T N KK  P+ 
Sbjct: 186 LQQQQNKSASRTTTSPTKVKASKASPAAAPRSVATPTGIPTPSTSASPPTVNIKKESPQM 245

Query: 633 ET 638
           ++
Sbjct: 246 QS 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,483
Number of Sequences: 336
Number of extensions: 5382
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)