Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30799
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    72   9e-14
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    33   0.050
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    28   1.4  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    28   1.9  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.5  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    27   3.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.3  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   5.7  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   7.5  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    26   7.5  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   10.0 

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 72.1 bits (169), Expect = 9e-14
 Identities = 27/51 (52%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
 Frame = +3

Query: 96  SMPKGTFNMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYKYPEEL 245
           S P G+F+++++KRVYSN+D  + ++P+F+E FDPENYS+W  +Y YPE+L
Sbjct: 257 SAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDL 307



 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
 Frame = +2

Query: 257 MSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELV--FPLSSDWQVDY 430
           M+ NLI G FQRL+  RK  F    + GE+ ++TI+G +V +G + V  F ++ DW    
Sbjct: 313 MTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDW---- 368

Query: 431 ESYDWKKLDPSSEETKKLVQDYFSWNETDKDGRKFNQGKI 550
            SY + KLD +  E K  ++D ++W++   +GR+   GK+
Sbjct: 369 GSYTFTKLDINKPEDKAFIEDAWAWDK-PIEGREVADGKV 407


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 33.1 bits (72), Expect = 0.050
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 359 WWNCCL-HQTGRRMRKPVCAFCLTSGTYP**GYSS*HLSEFLRVFVFGIPNGIVLG 195
           WWNC    Q  R   KPV  F L     P   + S  LS F   FV  + + +V+G
Sbjct: 359 WWNCWTWDQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMG 414


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = +2

Query: 440 DWKKLDPSSEETKKLVQDYFSWNETDKDGRKFNQGKIFQVNAD------KRSSQCIHISY 601
           DW   D S E T +  ++  S +E+D+D  + N+GKI +   D      K+ +  IHI Y
Sbjct: 228 DWLGSDQSME-TSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKKRAPHIHIEY 286

Query: 602 Q 604
           +
Sbjct: 287 E 287


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 681 EKLPNHPTLFNNL-EWFPFLVKVFYSYWYEMCIHWLERLSAFT*NILPWLNFLPSLSVSF 505
           E +  +PT    L +W P  V    S ++     W E+++    ++L WL F  + ++  
Sbjct: 249 ESITYYPTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWSLLVWLPFTKNTALGR 308

Query: 504 H 502
           H
Sbjct: 309 H 309


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 419 QVDYESYDWKKLD 457
           QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 378 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 265
           + H P  V+ L+    PN   +   CL IL   WN PV+ L
Sbjct: 80  YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 426 TTSPTTGRNWILRARRPR---NLSRTTSRGTKPTKTVESSTRARYFK*MPTNVPANVYTF 596
           T++P T  +  L +  P    NL+ T S  T  + TV SS        +PT+VP++V +F
Sbjct: 253 TSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTSVPSSVSSF 312

Query: 597 HTNN 608
            +++
Sbjct: 313 TSSS 316


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 124 MISSVSTPTKTKLNLFLTSGRSLTPRTIPFGMPNTNTLRNSLRC 255
           +++  +TP  +  +L   SGRSL   T   G+ N +T   +  C
Sbjct: 843 LVTDTTTPYLSDFSLVNESGRSLLHLTAACGLSNASTFLCNAGC 886


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 387 RSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTKPTKTVESSTR 542
           R S S  R+I    T P   R++    ++ +N   T     +P +TVE  TR
Sbjct: 531 RKSSSILRMISHSNTDPVELRSYNQSLQQNKNNEPTAVVPLEPEQTVELETR 582


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 568 QTFQPMYTHFIPITIKNFYQKR 633
           Q  +P++  + P+ IK+FY KR
Sbjct: 450 QINRPIFLTYFPLEIKSFYMKR 471


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 570 LSAFT*NILPWLNFLPSLSVSFH 502
           L  FT  +LP + F+PS++V+ H
Sbjct: 498 LPQFTATLLPEITFVPSITVTTH 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,778,272
Number of Sequences: 5004
Number of extensions: 90385
Number of successful extensions: 245
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)