Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30799
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 53 2e-07
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 52 6e-07
08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406 33 0.28
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 32 0.49
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.49
08_02_0742 - 20630313-20630798 31 0.85
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 30 2.6
01_01_0894 + 7047273-7048277,7049124-7049549 30 2.6
05_04_0146 + 18393447-18394043 29 3.4
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 29 4.5
02_05_0713 + 31159574-31160764 29 6.0
11_06_0735 - 26780384-26781583 28 7.9
07_03_1509 - 27246721-27247350 28 7.9
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 28 7.9
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 28 7.9
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 28 7.9
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 28 7.9
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/77 (33%), Positives = 41/77 (53%)
Frame = +2
Query: 257 MSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYES 436
++ N + G QR+D RK AF + + G + + G+W++RG E+ D D E
Sbjct: 326 VTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMEL 384
Query: 437 YDWKKLDPSSEETKKLV 487
Y+W K+D S E K+ V
Sbjct: 385 YEWTKVDISDEAQKERV 401
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/77 (33%), Positives = 41/77 (53%)
Frame = +2
Query: 257 MSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYES 436
++ N + G QR+D RK AF + + G + + G+W++RG E+ D D E
Sbjct: 891 VTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMEL 949
Query: 437 YDWKKLDPSSEETKKLV 487
Y+W K+D S E K+ V
Sbjct: 950 YEWTKVDISDEAQKERV 966
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +3
Query: 93 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEE 242
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E
Sbjct: 268 DLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDE 320
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +3
Query: 93 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEE 242
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E
Sbjct: 833 DLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDE 885
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 52.0 bits (119), Expect = 6e-07
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +3
Query: 93 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEE 242
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E
Sbjct: 285 DLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDE 337
Score = 46.0 bits (104), Expect = 4e-05
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +2
Query: 281 MFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDP 460
M +R+D RK AF + + G + G+W++RG+++ D D E Y+W K+D
Sbjct: 345 MNKRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDMELYEWTKVDL 403
Query: 461 SSEETKKLV 487
S E K+ V
Sbjct: 404 SDEAQKERV 412
>08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406
Length = 388
Score = 33.1 bits (72), Expect = 0.28
Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 6/127 (4%)
Frame = +3
Query: 300 KCANRLSHPSACLVKTTIPPSPECGCGAERSSCSRCRLIGRWTTSPTTGRNWILR-ARRP 476
+ A +H S L PPSPE C + + C R SP TG R P
Sbjct: 25 RSAGSSTHRSHDLDDGPAPPSPESSCRSNAAVCGCARCRRPDLISPGTGMRMRNRFGDGP 84
Query: 477 RNLSRTTSRGTKPTKTVE-----SSTRARYFK*MPTNVPANVYTFHTNNYKKLLPKKETI 641
+S + +T E SS RY + P V ++L +
Sbjct: 85 NRISAQSGAWLCRERTAETCRSTSSRSGRYRRLQPAAVAGTRRAELIKRLQELCHPANNL 144
Query: 642 PNC*IGW 662
PNC W
Sbjct: 145 PNCSASW 151
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 312 RLSHPSACLVKTTIPPSPECGCGAERSSCSRCRLI 416
R HP++ LV+ T PP P G G S SR RL+
Sbjct: 30 RAGHPTSALVRATAPPPPATGGG---GSSSRARLL 61
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.3 bits (70), Expect = 0.49
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 318 SHPSACLVKTTIPPSPECGCGAERSSC 398
SH C+ K PP P CGC +C
Sbjct: 206 SHAFVCVCKPAPPPPPPCGCSGGHGNC 232
>08_02_0742 - 20630313-20630798
Length = 161
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +3
Query: 324 PSACLVKTTIPPSPECGCGAERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSR 503
P ++++ PP P C CG S + + T P++ ARR R +
Sbjct: 25 PDPPSLRSSTPPDPSCHCGPSAGSTAAEVPHAGYATPPSSSHGEEEAARRRRRGRGEEAD 84
Query: 504 GTKPTKTVESSTRAR 548
G P + V + + R
Sbjct: 85 GVDPVRAVTTKRQRR 99
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -2
Query: 396 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 283
T +P T V + PN D CL IL N W+
Sbjct: 84 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 121
>01_01_0894 + 7047273-7048277,7049124-7049549
Length = 476
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 532 LSTVFVG-FVPREVVLDKFLGLLARRIQFLPVVGLVVHLPIRRQREHELLSAPHPHSGDG 356
L T VG FVP +DK +GL A+ + + ++ I RE LS P GDG
Sbjct: 233 LGTATVGEFVPWLAWVDKLMGLDAKAARISAELDGLLERVIADHRERRRLSQPDGGDGDG 292
>05_04_0146 + 18393447-18394043
Length = 198
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 285 SRG*TKCANRLSHPSACLVKTTIPPSPECGCGAERSSCSRCRLIGRWTTSP---TTGRNW 455
+RG TK A + +A + + E GC A RS+CS L G TT+P TG W
Sbjct: 113 ARGRTKAAVAPAAAAAVVAAASAGGGREMGCRAGRSTCS---LHGTTTTTPRWRQTGGPW 169
Query: 456 ILRARR 473
R +
Sbjct: 170 RRRQNK 175
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +3
Query: 297 TKCANRL-SHPS-ACLVKTTIPPSPECGCGAERSSCSRCRLIGRW---TTSPTTG 446
TKC R S P+ A L KT PSP C SC R GRW SP G
Sbjct: 4 TKCPRRKPSRPAGAALRKTGSAPSPTRSCTTSCRSCGR----GRWRAPACSPAAG 54
>02_05_0713 + 31159574-31160764
Length = 396
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +2
Query: 326 VCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDPSSEET 475
+C + + ++S +W W + P SD + S+ W K D + +++
Sbjct: 345 ICAKSKGESFSMSKIWQWSNVKGKLPAGSDNCSETASFPWMKRDATGDKS 394
>11_06_0735 - 26780384-26781583
Length = 399
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 630 KETIPNC*IGWDGWAIFRETVPSNFIGFFIKNHPGN 737
KE +P IGWDGW I + + G F PG+
Sbjct: 330 KEVVP---IGWDGWNIAKPESSGIYYGEFKCTGPGS 362
>07_03_1509 - 27246721-27247350
Length = 209
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +1
Query: 178 SGR-SLTPRTIPFGMPNT---NTLRNSLRCHEL*PYYGYVP 288
SGR L P TIP +P + +L ++++C+ L P+Y + P
Sbjct: 13 SGRLPLPPATIPVAVPPSPVLGSLPSAIKCNPLAPFYRFSP 53
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 446 KKLDPSSEETKKLVQDYFSWNETDKDGRKFNQGKI 550
K L P S++ KK+++D W E D N G I
Sbjct: 560 KALAPLSDDVKKILEDISHWLEASLDNLVTNCGSI 594
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 213 WYAEYKYPEELAKVS*AVTLLRVCSRG*TKCANRLSHPSACLVKTTIPPSPEC 371
W + + +E A+ S LL V R +K N + AC+V +PPS C
Sbjct: 583 WSSPFVKSQEEARTSLFALLLHVAIRLLSK--NDATFRKACMVAAKLPPSSSC 633
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 133 SVSTPTKTK-LNLFLTSGRSLTPRTIPFGMPNTNTLRNSLRC 255
S+ P + K L + + S +PF MPN TL S RC
Sbjct: 291 SIGEPLQMKNLQVIFPNSISFGRAELPFSMPNLETLNISSRC 332
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 384 ERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSR 503
ER +C + WT S W+L+ R P LS S+
Sbjct: 137 ERGERGKCSMWTLWTHSQLVVVGWLLKRRPPTKLSELESQ 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,809,107
Number of Sequences: 37544
Number of extensions: 589092
Number of successful extensions: 1614
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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